{"id":"W3177590516","doi":"10.1101/2021.07.05.451147","title":"The relationship between mucosal microbiota, colitis and systemic inflammation in Chronic Granulomatous Disorder","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University College London Hospitals NHS Foundation Trust; Rare Disease Foundation; BC Children's Hospital; Children's Hospital Foundation; CSL Behring","keywords":"Colitis; Microbiome; Pathogenesis; Immunology; Calprotectin; Inflammation; Ulcerative colitis; Inflammatory bowel disease; Gut flora; Bacteroides; Medicine; Systemic inflammation; Gastroenterology; Internal medicine; Biology; Disease; Bioinformatics; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002908089,0.0002636412,0.0002229048,0.0006598451,0.0002957848,0.0003770581,0.00009204092,0.0002771351,0.001139002],"category_scores_gemma":[0.001123923,0.0001116202,0.0001998091,0.0005146816,0.0003573692,0.0002505396,0.0004388211,0.0002860768,0.00008688447],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002116011,"about_ca_system_score_gemma":0.0001509886,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007075617,"about_ca_topic_score_gemma":0.0008222665,"domain_scores_codex":[0.9997635,0.00006994879,0.00002760894,0.00005257566,0.00004058445,0.00004567909],"domain_scores_gemma":[0.9992555,0.0001560912,0.0003438377,0.00003439142,0.00006326637,0.0001469696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006388311,0.00003923894,0.9756999,0.00007506963,0.00007342988,0.0004532428,0.00008793671,0.0000745027,0.01546175,0.00004961203,0.00007720702,0.007269351],"study_design_scores_gemma":[0.000005479747,0.0001217629,0.9974378,0.00001238601,0.00003156918,0.00132102,0.00009186425,0.0002060296,0.0005354334,0.00006791057,0.0001656652,0.000003014242],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984774,0.001022134,0.0001416417,0.00005829084,0.000004526861,0.000004565691,0.00007428053,0.000003196684,0.0002140711],"genre_scores_gemma":[0.9994223,0.0001671336,0.0002853806,0.0000202646,0.000007297275,0.000002739755,0.00005768038,0.000001201727,0.000036084],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001139002,"threshold_uncertainty_score":0.003810406,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01086351927915286,"score_gpt":0.2314916755290034,"score_spread":0.2206281562498505,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}