{"id":"W3177655241","doi":"10.1093/nar/gkab595","title":"RBFOX2 alters splicing outcome in distinct binding modes with multiple protein partners","year":2021,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"RNA-binding protein; RNA splicing; Biology; Alternative splicing; splice; Gene knockdown; Binding site; Poly(A)-binding protein; Genetics; Plasma protein binding; RNA; Cell biology; Gene; Messenger RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002919209,0.0003040493,0.0002708562,0.0001932579,0.0002078292,0.0003583847,0.0002792038,0.0003473127,0.001826371],"category_scores_gemma":[0.000260449,0.0002270473,0.0002929111,0.0001496706,0.0002744332,0.0002314294,0.0003596588,0.0005007319,0.0004898293],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002304153,"about_ca_system_score_gemma":0.0001281346,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006263992,"about_ca_topic_score_gemma":0.001293802,"domain_scores_codex":[0.9996874,0.00004154198,0.00001899016,0.0001057882,0.00007658577,0.00006964507],"domain_scores_gemma":[0.999824,0.00003571726,0.00004109389,0.00002498704,0.00001643056,0.00005779251],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001099006,0.00001190738,0.0006285761,0.00001274808,0.000007618899,0.00003280414,0.000007733996,0.00005181622,0.9984097,0.00008565166,0.00002502653,0.0006163724],"study_design_scores_gemma":[0.00002137495,0.000124276,0.01932386,0.000005994242,0.00003327358,0.0003954198,0.00004336238,0.003563384,0.974433,0.0001611718,0.001881728,0.00001323241],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957957,0.0003643259,0.002828761,0.00003553558,0.00001496052,0.000005381864,0.0002060149,0.00007533035,0.0006740316],"genre_scores_gemma":[0.997116,0.0001038478,0.001187262,0.00004171457,0.000003407364,0.000009645129,0.0003176252,0.00003729988,0.00118319],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001826371,"threshold_uncertainty_score":0.006109834,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06075850343129695,"score_gpt":0.3754601870952928,"score_spread":0.3147016836639958,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}