{"id":"W3177655241","doi":"10.1093/nar/gkab595","title":"RBFOX2 alters splicing outcome in distinct binding modes with multiple protein partners","year":2021,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"RNA-binding protein; RNA splicing; Biology; Alternative splicing; splice; Gene knockdown; Binding site; Poly(A)-binding protein; Genetics; Plasma protein binding; RNA; Cell biology; Gene; Messenger RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001203269,0.0001812801,0.0002246621,0.0002085107,0.0002557487,0.0001289826,0.0003646952,0.0001437537,0.00005061668],"category_scores_gemma":[0.0009137082,0.0001543191,0.00006934525,0.0006187327,0.0002332849,0.00001476834,0.0004137376,0.0005790038,0.00004494158],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000110037,"about_ca_system_score_gemma":0.000280371,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003083083,"about_ca_topic_score_gemma":0.0008522503,"domain_scores_codex":[0.9970148,0.00033771,0.000276994,0.0006528858,0.0007091251,0.001008492],"domain_scores_gemma":[0.9988217,0.00007344959,0.0000364761,0.0005781731,0.0002407258,0.000249501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002230854,0.00006705573,0.2240025,0.00005720686,0.00002404735,0.0001620137,0.00005299592,0.0001025334,0.7732024,0.00007230379,0.0001510362,0.001882872],"study_design_scores_gemma":[0.002905926,0.0007402761,0.03988374,0.000265431,0.000005716776,0.00005208694,0.002522524,0.006730521,0.9414249,0.00005597697,0.004868316,0.0005445488],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959138,0.0001525792,0.000423133,0.0004289322,0.00001522777,0.0004381952,0.00001059923,0.00001670288,0.00260084],"genre_scores_gemma":[0.9923255,0.000033844,0.001463492,0.00003853485,0.00009891616,0.0001163519,0.00006734623,0.00005036877,0.005805663],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1841187,"threshold_uncertainty_score":0.6292949,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06075850343129695,"score_gpt":0.3754601870952928,"score_spread":0.3147016836639958,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}