{"id":"W3177664761","doi":"10.3390/cells10071771","title":"sRNA Profiler: A User-Focused Interface for Small RNA Mapping and Profiling","year":2021,"lang":"en","type":"article","venue":"Cells","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Viroid; Biology; RNA; Computational biology; Circular RNA; Genetics; Transfer RNA; Genome; Small RNA; Potato spindle tuber viroid; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001763146,0.00009443201,0.0001455171,0.000007164775,0.0001752342,0.00008354184,0.0001167488,0.00004533258,0.00005990614],"category_scores_gemma":[0.0001549854,0.00003674515,0.00004446151,0.0001382065,0.00003382294,0.00004961812,0.0001692555,0.000086043,0.00001809142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001341555,"about_ca_system_score_gemma":0.00001290845,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002273235,"about_ca_topic_score_gemma":0.0001181313,"domain_scores_codex":[0.9991923,0.00004107091,0.0001198137,0.0002647313,0.00009358403,0.00028852],"domain_scores_gemma":[0.9994338,0.0003223546,0.00003513906,0.00003570484,0.00008580871,0.00008719802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001365888,0.00001993239,0.0002129907,0.0000401271,0.00001593903,0.000006200301,0.00006874333,8.18093e-7,0.9811065,0.00003059637,0.001417591,0.01706689],"study_design_scores_gemma":[0.0001325758,0.00006888181,0.001098053,0.00004725818,0.000004525911,0.000002548683,0.0004583108,0.000120066,0.9331024,0.0001024909,0.0647473,0.0001156049],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967045,0.0009541258,0.00005813051,0.0009649343,0.00008394807,0.0003841911,0.0001973198,0.00004200279,0.0006108445],"genre_scores_gemma":[0.9769014,0.0009748422,0.01062511,0.0003948617,0.0004515791,0.0001921123,0.0001138402,0.000003449245,0.01034279],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0633297,"threshold_uncertainty_score":0.1498424,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07025701999885157,"score_gpt":0.2627362417701086,"score_spread":0.192479221771257,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}