{"id":"W3178181389","doi":"10.1038/s41438-021-00612-0","title":"A chromosome-scale genome sequence of pitaya (Hylocereus undatus) provides novel insights into the genome evolution and regulation of betalain biosynthesis","year":2021,"lang":"en","type":"article","venue":"Horticulture Research","topic":"Botanical Research and Applications","field":"Agricultural and Biological Sciences","cited_by":124,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"","keywords":"Biology; Genome; Genetics; Gene; Betalain; Retrotransposon; Whole genome sequencing; Chromosome; Genome evolution; Comparative genomics; Gene duplication; Genomics; Computational biology; Transposable element","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006721551,0.0001063966,0.0001949996,0.00002280858,0.0003904628,0.00006807745,0.000333635,0.0001242618,0.0001140807],"category_scores_gemma":[0.0005834608,0.00003790262,0.00007243859,0.001345824,0.0006591016,0.0001346973,0.0002657483,0.0002682135,0.000008755306],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007638291,"about_ca_system_score_gemma":0.00008777525,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005291495,"about_ca_topic_score_gemma":0.002329146,"domain_scores_codex":[0.9980211,0.0002436989,0.0003066448,0.0003671559,0.0007258035,0.0003355728],"domain_scores_gemma":[0.998214,0.0005552131,0.00008816276,0.0001810375,0.0008049193,0.0001566317],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001761179,0.0001380496,0.0003603256,0.00003675258,0.00001962207,9.241649e-7,0.0003052457,0.000004376353,0.9911036,0.003363446,0.00001634913,0.004633687],"study_design_scores_gemma":[0.0001800397,0.0004749292,0.7308528,0.0000888481,0.00002696003,0.00001227631,0.002467903,0.0004279017,0.2399008,0.008182466,0.01717057,0.000214491],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932516,0.002074494,0.00003816084,0.003800214,0.000008062055,0.0004552078,0.00006980241,0.00001359619,0.0002888369],"genre_scores_gemma":[0.9985221,0.000582272,0.0002803646,0.00001228962,0.00008926214,0.00006382858,0.00008057113,0.00000158959,0.0003677001],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7512028,"threshold_uncertainty_score":0.3003164,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0519848181794493,"score_gpt":0.3012483299881465,"score_spread":0.2492635118086972,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}