{"id":"W3178501946","doi":"10.1093/bib/bbab238","title":"Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases","year":2021,"lang":"en","type":"article","venue":"Briefings in Bioinformatics","topic":"Research Data Management Practices","field":"Computer Science","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Consortium of International Agricultural Research Centers; Agricultural Research Service; Agence Nationale de la Recherche; National Institute of Food and Agriculture; Saskatchewan Pulse Growers; Department of Agriculture, Philippines; University of Connecticut; Western Grains Research Foundation; Ministry of Agriculture - Saskatchewan; Genome Canada; Washington State University; Oak Ridge Institute for Science and Education; National Pork Board; U.S. Department of Agriculture; U.S. Department of Energy; National Science Foundation","keywords":"Interoperability; Data science; Computer science; Data management; World Wide Web; Database; Knowledge management","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.003362884,0.0001287192,0.0002620338,0.0002198668,0.0001333687,0.002079332,0.001857184,0.0000350811,0.0000540148],"category_scores_gemma":[0.001415064,0.0001440733,0.00003042056,0.000510474,0.0001219357,0.009566585,0.005610326,0.0003024678,0.00000657904],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006293209,"about_ca_system_score_gemma":0.0003695083,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007698471,"about_ca_topic_score_gemma":0.0002351373,"domain_scores_codex":[0.9980205,0.000202065,0.0006807723,0.0001986352,0.0005387229,0.0003592483],"domain_scores_gemma":[0.9978087,0.0004295889,0.0004144624,0.001090631,0.0001640449,0.00009260331],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005120781,0.0008821333,0.03873746,0.004307815,0.0002939108,0.0005731465,0.01232862,0.00117211,0.001522534,0.01510694,0.020343,0.9042203],"study_design_scores_gemma":[0.003935141,0.0002889914,0.0707556,0.000684156,0.00005089692,0.00007479725,0.002587393,0.3186035,0.002557166,0.0004238708,0.5992306,0.0008078493],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5568001,0.0003295304,0.4385727,0.001314434,0.00006425358,0.0007004195,0.0003209,0.00006168224,0.001835926],"genre_scores_gemma":[0.2724032,0.0008303873,0.7237438,0.002618514,0.00001614248,0.00005117972,0.0001390655,0.00002431492,0.0001733825],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.9034124,"threshold_uncertainty_score":0.9989566,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0705786508652275,"score_gpt":0.354216178600592,"score_spread":0.2836375277353645,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}