{"id":"W3179407536","doi":"10.1139/gen-2021-0006","title":"Differential DNA methylation analysis reveals key genes in Chinese Qingyu and Landrace pigs","year":2021,"lang":"en","type":"article","venue":"Genome","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; DNA methylation; Gene; Genetics; Epigenetics; Methylation; Intramuscular fat; Bisulfite sequencing; genomic DNA; Quantitative trait locus; Candidate gene; Gene expression; Animal science","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002027363,0.0001851985,0.0002643898,0.0006383628,0.0002242685,0.0001638881,0.0001367756,0.0002277,0.0006675727],"category_scores_gemma":[0.0001877444,0.0001428461,0.0003428138,0.0005388889,0.0002045987,0.00008394359,0.0001886524,0.0001454634,0.00006413525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001740101,"about_ca_system_score_gemma":0.0001719241,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005574985,"about_ca_topic_score_gemma":0.006968136,"domain_scores_codex":[0.9998807,0.00001273168,0.000009134858,0.00004779805,0.00001834289,0.00003121606],"domain_scores_gemma":[0.9999119,0.00002056923,0.00002939976,0.000009256384,0.00001313853,0.00001575661],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008146665,0.0000267168,0.228303,0.0001496328,0.000197022,0.0006110293,0.0008204227,0.0002525455,0.7554671,0.0001071062,0.0001023122,0.01314847],"study_design_scores_gemma":[0.00001627731,0.0001311437,0.9871153,0.000005640222,0.00009787889,0.000349804,0.0001603246,0.0005146165,0.01097234,0.00005765484,0.0005689997,0.00001016543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988859,0.0002326553,0.0004509832,0.00001279161,0.000001748882,0.000004465192,0.0002193915,0.00000444192,0.0001875116],"genre_scores_gemma":[0.9985297,0.0001431385,0.0003351052,0.0000417977,0.000003003164,0.0000154598,0.0004915464,0.000005326463,0.000434959],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005574985,"threshold_uncertainty_score":0.01108503,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007777273492578431,"score_gpt":0.2701210051356691,"score_spread":0.2623437316430907,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}