{"id":"W3179498563","doi":"10.1101/2021.07.04.451072","title":"Examining the effects of an anti-Salmonella bacteriophage preparation, BAFASAL, on <i>ex vivo</i> human gut microbiome composition and function using a multi-omics approach","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Microbiome; Salmonella; Biology; Antibiotics; Food chain; Metagenomics; Human pathogen; Gut flora; Salmonella enterica; Gut microbiome; Biotechnology; Microbiology; Bacteria; Gene; Bioinformatics; Ecology; Immunology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004693372,0.0004707248,0.0003195011,0.000316965,0.0002282734,0.0004440302,0.0001377898,0.0004438698,0.001747358],"category_scores_gemma":[0.0004255339,0.0002096987,0.0005734267,0.0002060302,0.0002892822,0.0002233235,0.0003182394,0.0005551846,0.0004382026],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001479552,"about_ca_system_score_gemma":0.0002194034,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005664004,"about_ca_topic_score_gemma":0.001195841,"domain_scores_codex":[0.9996501,0.00009582692,0.00002337447,0.00009653402,0.00008169088,0.00005238937],"domain_scores_gemma":[0.9997353,0.00008140348,0.00005445292,0.00002073868,0.00006322531,0.00004483406],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006894959,0.0001529343,0.001728107,0.0001724732,0.00003119227,0.00002687511,0.0000456744,0.0001271855,0.9925211,0.00001779774,0.0001166628,0.004370406],"study_design_scores_gemma":[0.00003819913,0.005229876,0.03250268,0.000044603,0.0001526126,0.0001752909,0.0002997914,0.001430419,0.9553953,0.00005806215,0.004642377,0.00003081891],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860051,0.003714501,0.00623344,0.0002185154,0.0001746317,0.0001581098,0.001884634,0.00009715676,0.001513829],"genre_scores_gemma":[0.9789308,0.002195692,0.01245037,0.0005737167,0.00005227614,0.0002716168,0.002085516,0.00006054869,0.003379424],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001747358,"threshold_uncertainty_score":0.005845547,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01768776585072376,"score_gpt":0.2318614954572197,"score_spread":0.2141737296064959,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}