{"id":"W3180080324","doi":"10.1093/bioinformatics/btab524","title":"Refget: standardized access to reference sequences","year":2021,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"European Molecular Biology Laboratory; National Institute of General Medical Sciences; Wellcome Trust","keywords":"Implementation; Computer science; Identifier; Cloud computing; Suite; Identification (biology); Database; Data mining; Programming language; Biology; Operating system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03274076,0.002663652,0.001564784,0.00576541,0.001644357,0.004821238,0.006026803,0.004014575,0.03731217],"category_scores_gemma":[0.09940531,0.002197732,0.001825641,0.004880038,0.00139463,0.00650202,0.006815878,0.004655866,0.06193992],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001579172,"about_ca_system_score_gemma":0.00500468,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003641384,"about_ca_topic_score_gemma":0.002903312,"domain_scores_codex":[0.9814634,0.00705385,0.004150196,0.002347338,0.00392998,0.001055187],"domain_scores_gemma":[0.9290098,0.02892798,0.004836256,0.02003674,0.01550864,0.001680612],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003614903,0.0004806456,0.009916281,0.005233391,0.0002605083,0.00167524,0.002146431,0.005569547,0.04311264,0.08210444,0.6252553,0.2206307],"study_design_scores_gemma":[0.0004271298,0.0003707526,0.00296856,0.001897946,0.0001105186,0.0014206,0.0003252647,0.005615694,0.04396633,0.03246724,0.910146,0.0002839545],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.01392327,0.001602825,0.6174359,0.003124408,0.001019322,0.001777934,0.1189025,0.2176429,0.02457087],"genre_scores_gemma":[0.04556749,0.001735838,0.3980432,0.005052253,0.0005073799,0.004144153,0.4652668,0.06413151,0.01555145],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.03731217,"threshold_uncertainty_score":0.1731517,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02716707637083181,"score_gpt":0.2990807625738304,"score_spread":0.2719136862029986,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}