{"id":"W3181993261","doi":"10.1101/2021.07.13.452221","title":"Fifteen shades of clay: distinct microbial community profiles obtained from bentonite samples by cultivation and direct nucleic acid extraction","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Nuclear Waste Management Organization; McMaster University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bentonite; Nucleic acid; Bacteria; Biology; Microbial population biology; Microbiology; Food science; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001592312,0.0003569402,0.0002316184,0.0005453104,0.000244233,0.0005379294,0.0001403006,0.0002530234,0.0004219557],"category_scores_gemma":[0.0002814109,0.0001443698,0.0002291606,0.0004024933,0.000244618,0.0002043808,0.0003673709,0.0002992632,0.0001461443],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009180049,"about_ca_system_score_gemma":0.000102923,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001481112,"about_ca_topic_score_gemma":0.003076456,"domain_scores_codex":[0.9997393,0.00002210407,0.00002221427,0.00009417107,0.00007558455,0.00004665119],"domain_scores_gemma":[0.9998548,0.00002863547,0.00003455115,0.000007212408,0.00004214351,0.00003259422],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005819055,0.00002114568,0.004681614,0.00002954536,0.000008087411,0.00002645147,0.0001188594,0.00003182676,0.9931653,0.000009481173,0.00001006366,0.001839578],"study_design_scores_gemma":[0.00001061044,0.0005794899,0.2925078,0.00002913309,0.00008173742,0.0003475655,0.001095388,0.001607529,0.7019554,0.00006295503,0.001692766,0.00002960697],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977949,0.0001453979,0.001169092,0.00001144433,0.000005333055,0.00002211074,0.0004808361,0.00002074127,0.000350164],"genre_scores_gemma":[0.9938093,0.0002248004,0.00408732,0.00003512969,0.000006291024,0.00003968451,0.001223809,0.00001973256,0.0005538744],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001481112,"threshold_uncertainty_score":0.002945006,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01487050469815304,"score_gpt":0.2415068007050409,"score_spread":0.2266362960068878,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}