{"id":"W3182124707","doi":"10.1016/j.cell.2021.05.023","title":"Translocated microbiome composition determines immunological outcome in treated HIV infection","year":2021,"lang":"en","type":"article","venue":"Cell","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":80,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Institute on Drug Abuse; National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; National Institutes of Health; Case Western Reserve University","keywords":"Biology; Microbiome; Serratia; Abundance (ecology); Immunology; Innate immune system; Inflammation; Downregulation and upregulation; Gene; Microbiology; Genetics; Immune system; Ecology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002825473,0.0001255746,0.0003209307,0.0002885434,0.0003661097,0.001010632,0.0001407405,0.0004428097,0.002580858],"category_scores_gemma":[0.001394129,0.0001279351,0.0001241754,0.0002196472,0.0003168448,0.0003766258,0.0003983877,0.0005357872,0.0002458892],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002267643,"about_ca_system_score_gemma":0.0001805649,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004300038,"about_ca_topic_score_gemma":0.0005536969,"domain_scores_codex":[0.9996903,0.0001165713,0.00001733854,0.00003773984,0.00005189728,0.00008632591],"domain_scores_gemma":[0.9995882,0.00008303623,0.0001452615,0.00002200879,0.00004168175,0.0001198059],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01030166,0.001533284,0.7105723,0.0001551875,0.0002932739,0.0009117999,0.0009913313,0.0005949537,0.2004207,0.0006255349,0.0007810441,0.07281896],"study_design_scores_gemma":[0.00004003928,0.001660609,0.9871504,0.00005090377,0.00008980411,0.0008684996,0.001134579,0.000886801,0.006749358,0.0004621373,0.0008908992,0.0000159459],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988751,0.000438041,0.00005669856,0.00006176408,0.00001337964,0.000006036621,0.00003950418,0.000002199421,0.0005072698],"genre_scores_gemma":[0.9993649,0.0001523835,0.00006155885,0.00005083343,0.0000125579,0.000005647582,0.00005757628,0.00000221269,0.000292346],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002580858,"threshold_uncertainty_score":0.008633792,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02130830917816774,"score_gpt":0.2664418531544683,"score_spread":0.2451335439763005,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}