{"id":"W3182270077","doi":"10.1038/s41467-021-24549-z","title":"Energy efficiency and biological interactions define the core microbiome of deep oligotrophic groundwater","year":2021,"lang":"en","type":"article","venue":"Nature Communications","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Science for Life Laboratory; Knut och Alice Wallenbergs Stiftelse; Office of Science; Crafoordska Stiftelsen; Uppsala Universitet; Vetenskapsrådet; Joint Genome Institute; U.S. Department of Energy","keywords":"Ecological niche; Microbiome; Ecology; Ecosystem; Biology; Groundwater; Metagenomics; Niche; Genome; Habitat; Bioinformatics; Genetics; Geology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001543729,0.0002202476,0.0003231385,0.0006812806,0.0003667927,0.0006596196,0.0001226811,0.0003407805,0.000450587],"category_scores_gemma":[0.000318842,0.0001438241,0.0001464338,0.0006679941,0.0004070883,0.0003836131,0.0007973649,0.0001671171,0.00009930034],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002201176,"about_ca_system_score_gemma":0.0002325491,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003528344,"about_ca_topic_score_gemma":0.005303666,"domain_scores_codex":[0.9997923,0.00002625903,0.00001009782,0.00007495077,0.00002938226,0.00006692849],"domain_scores_gemma":[0.9998928,0.00001615166,0.00003820894,0.00001069047,0.00001831263,0.00002368498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002047126,0.00002844679,0.2281044,0.0001256104,0.00005719101,0.000109406,0.001006889,0.0007681348,0.7519906,0.0007243663,0.0001145942,0.01676549],"study_design_scores_gemma":[0.000003606682,0.00006356593,0.9795369,0.00001922142,0.00003108901,0.0001813993,0.001450343,0.001480566,0.01428268,0.001232666,0.001700576,0.00001736934],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980714,0.0002576408,0.0009857789,0.00001938077,0.000001266803,0.000003251954,0.0003070894,0.000007797037,0.0003464841],"genre_scores_gemma":[0.9985464,0.0001237576,0.0009236563,0.00001918289,0.00000164143,0.000004276422,0.0002646733,0.000004561415,0.0001118329],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003528344,"threshold_uncertainty_score":0.007015646,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02041702265923732,"score_gpt":0.2593236480474528,"score_spread":0.2389066253882155,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}