{"id":"W3182604487","doi":"10.1101/2021.07.02.450849","title":"Hundreds of viral families in the healthy infant gut","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Det Sundhedsvidenskabelige Fakultet, Københavns Universitet; Canadian Institutes of Health Research; Copenhagen Graduate School for Nanoscience and Nanotechnology; Novo Nordisk Fonden; Institut National de la Recherche Agronomique; Novo Nordisk; Danish Agency for Science and Higher Education; Faculty of Health and Medical Sciences, University of Western Australia; Canadian Allergy, Asthma and Immunology Foundation","keywords":"Human virome; Biology; Metagenomics; Bacteriophage; Gut flora; Microbiome; Virology; Feces; Genetics; Microbiology; Gene; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005742649,0.0003497312,0.0004212403,0.00174776,0.0005971253,0.0008786354,0.0002141635,0.0003658025,0.001405161],"category_scores_gemma":[0.001351807,0.0002438833,0.0005639161,0.001339112,0.0002741468,0.0004545488,0.0007342845,0.0002986225,0.0006036378],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002937137,"about_ca_system_score_gemma":0.000211892,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002186285,"about_ca_topic_score_gemma":0.002651661,"domain_scores_codex":[0.9994012,0.00008822678,0.00004607926,0.0002177985,0.0001455239,0.0001012345],"domain_scores_gemma":[0.999315,0.0001951375,0.0001984657,0.00006638448,0.0001379509,0.0000870362],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007157165,0.00003634313,0.8435619,0.0004120831,0.0002470046,0.0007343674,0.0009603356,0.0006523637,0.1015019,0.0003225741,0.001479288,0.04937604],"study_design_scores_gemma":[0.000009397349,0.0001523426,0.9744512,0.0001504181,0.0001368566,0.001766581,0.0007802015,0.002847196,0.008740272,0.000554276,0.01038164,0.00002969409],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909719,0.003321898,0.001496031,0.00004540869,0.00001720507,0.00001251372,0.003254596,0.00007249599,0.0008079399],"genre_scores_gemma":[0.9866654,0.001153208,0.004644234,0.00006974992,0.00002355833,0.00002631071,0.006683871,0.00006013306,0.0006734908],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002186285,"threshold_uncertainty_score":0.00470072,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01043431141889758,"score_gpt":0.2255438951170207,"score_spread":0.2151095836981232,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}