{"id":"W3182715522","doi":"10.1158/1538-7445.am2021-17","title":"Abstract 17: Proteogenomic characterization of pancreatic ductal adenocarcinoma","year":2021,"lang":"en","type":"article","venue":"Cancer Research","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Proteomics; Biology; Glycoproteomics; Proteogenomics; Pancreatic cancer; Cancer research; Phosphoproteomics; Cancer; KRAS; Kinome; Transcriptome; Shotgun proteomics; Proteome; CDKN2A; Computational biology; Gene; Bioinformatics; Kinase; Genetics; Gene expression; Colorectal cancer; Protein phosphorylation; Protein kinase A","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002197226,0.0004306673,0.0003293125,0.001157601,0.0002710574,0.0005764441,0.0001710704,0.0002220807,0.0009008663],"category_scores_gemma":[0.0002295691,0.0001344336,0.000365242,0.001087375,0.0001471635,0.0002064565,0.0003348604,0.0003202629,0.0004021801],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002000484,"about_ca_system_score_gemma":0.0002792535,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007746163,"about_ca_topic_score_gemma":0.0006894496,"domain_scores_codex":[0.9998567,0.00001190093,0.00001294936,0.00004639992,0.00004657256,0.00002537289],"domain_scores_gemma":[0.9998846,0.00001287899,0.00002464487,0.00001129209,0.00004179399,0.00002466142],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001735878,0.00003475241,0.0104911,0.0001025704,0.00004918677,0.0002204623,0.00004450606,0.0002128248,0.9814553,0.00007913229,0.0002576529,0.006878957],"study_design_scores_gemma":[0.00001988582,0.0003222827,0.2617711,0.00002416136,0.0001732794,0.002484688,0.0002313966,0.007855586,0.7182499,0.0002795584,0.008552616,0.00003568795],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9823151,0.001855407,0.007379667,0.0001106289,0.00003461659,0.00006088604,0.00658195,0.0002208057,0.001440953],"genre_scores_gemma":[0.9633942,0.001931141,0.01791594,0.0001430881,0.00002898908,0.0001070919,0.013821,0.0001107031,0.002548017],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001157601,"threshold_uncertainty_score":0.00301367,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1017847080025905,"score_gpt":0.4180607883216714,"score_spread":0.3162760803190809,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}