{"id":"W3182811179","doi":"10.1101/2021.07.12.452121","title":"Genetic, bioacoustic and morphological analyses reveal cryptic speciation in the warbling vireo complex ( <i>Vireo gilvus</i> : Vireonidae: Passeriformes)","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge","funders":"Burke Museum, University of Washington; Cornell Lab of Ornithology; Universitetet i Oslo; University of Michigan","keywords":"Subspecies; Biology; Species complex; Reproductive isolation; Zoology; Taxon; Microsatellite; Evolutionary biology; Ecology; Phylogenetic tree; Population; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002338375,0.0001816068,0.0001370388,0.0008767967,0.0002717444,0.0003302824,0.000181529,0.0001755722,0.0009695578],"category_scores_gemma":[0.0002505952,0.00009747511,0.0001285015,0.0003253114,0.0003736556,0.0001746021,0.0004191943,0.000142298,0.0001484572],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001535311,"about_ca_system_score_gemma":0.00007898334,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002669667,"about_ca_topic_score_gemma":0.006412013,"domain_scores_codex":[0.9999126,0.00001760566,0.000005941641,0.00003295315,0.00001276749,0.0000180956],"domain_scores_gemma":[0.9998484,0.00002694509,0.00006027674,0.00001374778,0.00001522418,0.00003534775],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002065748,0.00005207907,0.7625896,0.00002645602,0.00007494974,0.0002948441,0.001194862,0.0003711637,0.2200745,0.0001947006,0.00007114137,0.01484904],"study_design_scores_gemma":[0.000002647354,0.00003377221,0.9974107,0.000003679432,0.00001235338,0.0001789041,0.0003573466,0.000524135,0.001271622,0.00003660419,0.0001651893,0.000003144977],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996735,0.00002021738,0.0001177639,0.000003940173,4.611472e-7,8.929763e-7,0.00001507871,0.00000367979,0.000164409],"genre_scores_gemma":[0.9996315,0.000009914715,0.000205146,0.000005639217,8.364906e-7,0.000001661452,0.00004362491,0.000002405139,0.00009912044],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002669667,"threshold_uncertainty_score":0.00530833,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03084757735281386,"score_gpt":0.2559389629977936,"score_spread":0.2250913856449798,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}