{"id":"W3182834276","doi":"10.1002/ajp.23298","title":"Evolutionary history of orangutan plasmodia revealed by phylogenetic analysis of complete mtDNA genomes and new biogeographical divergence dating calibration models","year":2021,"lang":"en","type":"article","venue":"American Journal of Primatology","topic":"Primate Behavior and Ecology","field":"Psychology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"The Scarborough Hospital; University of Toronto; Simon Fraser University; Canadians Living with HIV; Ontario Stroke Network; Durham College","funders":"National Institutes of Health","keywords":"Biology; Clade; Phylogenetic tree; Evolutionary biology; Phylogenetics; Plasmodium (life cycle); Zoology; Genome; Genetic divergence; Parasite hosting; Genetics; Genetic diversity; Gene; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002077976,0.0001462244,0.001039736,0.0005196409,0.00003286041,0.000002811074,0.000231879,0.0001006415,0.0007073143],"category_scores_gemma":[0.00004528066,0.0001488742,0.0002138102,0.0006837305,0.0007652653,0.00008663766,0.00009057862,0.0001829507,8.411291e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009143104,"about_ca_system_score_gemma":0.0003089035,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003789905,"about_ca_topic_score_gemma":0.00003175542,"domain_scores_codex":[0.9979447,0.00045909,0.0009129933,0.000259463,0.0001701264,0.0002537037],"domain_scores_gemma":[0.9979532,0.0002340625,0.001201818,0.0002575674,0.0002026723,0.0001506915],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002586706,0.0002679952,0.9406636,0.00002174517,0.001456748,0.00009640873,0.001862574,0.0003662441,0.04576294,0.001499476,0.003056685,0.004686937],"study_design_scores_gemma":[0.002197908,0.001704202,0.9736645,0.00003684531,0.004409846,0.001757659,0.002447804,0.009554854,0.0004981254,0.0017575,0.001441433,0.0005293431],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9803492,0.008650168,0.01013165,0.000206634,0.0003230165,0.00005375765,0.00008429771,0.000006507681,0.0001947655],"genre_scores_gemma":[0.9927765,0.0004687713,0.00650104,0.0001277126,0.00001589738,0.000002201287,0.00004634969,0.00001230263,0.00004926381],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04526482,"threshold_uncertainty_score":0.7744596,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03383966837914311,"score_gpt":0.2816486526416381,"score_spread":0.247808984262495,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}