{"id":"W3183348075","doi":"10.1128/msystems.00642-21","title":"Archaea Are Rare and Uncommon Members of the Mammalian Skin Microbiome","year":2021,"lang":"en","type":"article","venue":"mSystems","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Archaea; Biology; Phylum; Microbiome; Thaumarchaeota; Metagenomics; 16S ribosomal RNA; Ribosomal RNA; Human Microbiome Project; Amplicon; Evolutionary biology; Human skin; Pyrosequencing; Genetics; Gene; Human microbiome; Polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001079054,0.0000891018,0.0001438378,0.00001537603,0.00006158064,0.0000115128,0.0001146971,0.0001012077,0.00001262145],"category_scores_gemma":[0.00001378133,0.00006732435,0.00006585279,0.00008432326,0.00006645414,9.465409e-7,0.0001387405,0.00005875418,0.000002385967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001112568,"about_ca_system_score_gemma":0.00007243333,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001577151,"about_ca_topic_score_gemma":0.0008508629,"domain_scores_codex":[0.9993256,0.0001000148,0.0001700129,0.0002002765,0.00005258412,0.0001515326],"domain_scores_gemma":[0.9994554,0.000005348152,0.00009907874,0.0003395127,0.00005359858,0.0000470693],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000008746276,0.00001867517,0.01810195,0.0002443031,0.00002147767,0.000003821332,0.0001244016,0.000002616734,0.9768112,0.00003984877,0.004473279,0.0001496924],"study_design_scores_gemma":[0.0004908011,0.00005242232,0.03508399,0.0001475312,0.00001539107,0.0001757348,0.0008438314,0.000004056038,0.7067276,0.000009174861,0.2563032,0.000146214],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959226,0.002278007,0.00001065962,0.000580025,0.0002592405,0.0001267269,0.00007614546,0.00000356265,0.0007430646],"genre_scores_gemma":[0.9970425,0.00005489311,0.00006000564,0.0002223103,0.00009111462,0.000004082449,0.00004626562,0.00001172854,0.00246715],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2700835,"threshold_uncertainty_score":0.2745407,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007495736869116663,"score_gpt":0.223323566408952,"score_spread":0.2158278295398353,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}