{"id":"W3183348075","doi":"10.1128/msystems.00642-21","title":"Archaea Are Rare and Uncommon Members of the Mammalian Skin Microbiome","year":2021,"lang":"en","type":"article","venue":"mSystems","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Archaea; Biology; Phylum; Microbiome; Thaumarchaeota; Metagenomics; 16S ribosomal RNA; Ribosomal RNA; Human Microbiome Project; Amplicon; Evolutionary biology; Human skin; Pyrosequencing; Genetics; Gene; Human microbiome; Polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008858754,0.0004789376,0.000979703,0.001413311,0.001420184,0.002302303,0.0003875544,0.0008196747,0.002999186],"category_scores_gemma":[0.002107326,0.0004731265,0.0004640312,0.001640731,0.0009041413,0.001140515,0.001603365,0.0007275798,0.001391208],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002461753,"about_ca_system_score_gemma":0.0006608681,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001150227,"about_ca_topic_score_gemma":0.002318818,"domain_scores_codex":[0.9987465,0.0002698459,0.0001178325,0.0004075147,0.0002931926,0.0001650141],"domain_scores_gemma":[0.9983188,0.0003719366,0.0005864887,0.0002722958,0.000252594,0.0001979978],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001496129,0.0001662581,0.2711249,0.005768187,0.0006672533,0.002300791,0.003699901,0.0004058385,0.3675649,0.006501118,0.004230661,0.3360741],"study_design_scores_gemma":[0.00003423012,0.0008153755,0.5685824,0.002346838,0.0005119281,0.01689413,0.007493171,0.0006425602,0.05075295,0.011729,0.3400339,0.0001635418],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7758656,0.1833377,0.01637516,0.002185518,0.0007557551,0.00008673053,0.003918796,0.0003789397,0.01709587],"genre_scores_gemma":[0.9274617,0.04779789,0.01457757,0.0006993016,0.0002965817,0.00007564733,0.002670933,0.0001063407,0.006314221],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002999186,"threshold_uncertainty_score":0.01003325,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007495736869116663,"score_gpt":0.223323566408952,"score_spread":0.2158278295398353,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}