{"id":"W3184514137","doi":"10.1016/j.meegid.2021.105134","title":"Predominance of SARS-CoV-2 P.1 (Gamma) lineage inducing the recent COVID-19 wave in southern Brazil and the finding of an additional S: D614A mutation","year":2021,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fundação de Amparo à Pesquisa do Estado do Rio Grande do Sul; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Ministério da Ciência, Tecnologia e Inovação; Financiadora de Estudos e Projetos; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Lineage (genetic); Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Pandemic; Mutation; 2019-20 coronavirus outbreak; Quarter (Canadian coin); Biology; Virology; Genetics; Medicine; Geography; Gene; Infectious disease (medical specialty); Internal medicine; Outbreak; Disease","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007000194,0.00009104455,0.0001740086,0.0001204446,0.0001326572,0.00002152993,0.00003218053,0.00009843967,0.00001569296],"category_scores_gemma":[0.000750047,0.00006563016,0.00004163127,0.0003751684,0.0002581262,0.0000597547,0.00004627912,0.0001825732,0.000001167491],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001156693,"about_ca_system_score_gemma":0.0003395994,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007557599,"about_ca_topic_score_gemma":0.001099713,"domain_scores_codex":[0.9988859,0.0002036167,0.0003113613,0.0002083889,0.000258509,0.0001322425],"domain_scores_gemma":[0.9991386,0.0002732683,0.0001535494,0.0001780652,0.0002355526,0.00002096747],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002547939,0.0007852299,0.1905578,0.0009763662,0.0002243598,0.00005033086,0.0172419,0.0009885491,0.7156653,0.002284856,0.000760289,0.06791711],"study_design_scores_gemma":[0.01055702,0.0007213639,0.3789806,0.0004241289,0.0001815526,0.0004959401,0.003270704,0.1004482,0.4814332,0.005494874,0.01768828,0.0003042069],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955855,0.0009810865,0.002339225,0.00046603,0.0000758908,0.0003252597,0.00006421527,0.000009304778,0.0001535147],"genre_scores_gemma":[0.9979171,0.0002015924,0.0001861791,0.00150505,0.00009983692,0.0000374055,0.0000350206,0.000009581323,0.000008249159],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2342321,"threshold_uncertainty_score":0.267632,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05831969028895783,"score_gpt":0.3541763440131932,"score_spread":0.2958566537242354,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}