{"id":"W3185050161","doi":"10.1097/tp.0000000000003884","title":"A 2-fold Approach to Polyoma Virus (BK) Nephropathy in Kidney Transplants: Distinguishing Direct Virus Effects From Cognate T Cell–mediated Inflammation","year":2021,"lang":"en","type":"article","venue":"Transplantation","topic":"Polyomavirus and related diseases","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"The Metabolomics Innovation Centre; University of Alberta","funders":"","keywords":"Inflammation; T cell; Pathology; Nephropathy; Immunology; Medicine; Immune system; Endocrinology; Diabetes mellitus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001636578,0.0003265913,0.0004823356,0.0002581696,0.0001126422,0.00006421884,0.0001033184,0.0002528874,0.00005655785],"category_scores_gemma":[0.0001826402,0.0003104109,0.0001371038,0.0006576855,0.00003468962,0.0002161475,0.000009399265,0.0003231151,0.00009838508],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009979734,"about_ca_system_score_gemma":0.0002255169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001964834,"about_ca_topic_score_gemma":0.0003178302,"domain_scores_codex":[0.9977806,0.0002241531,0.0005428481,0.000573908,0.0004441398,0.0004343324],"domain_scores_gemma":[0.9987807,0.0002882736,0.0001095545,0.0002525041,0.0000784384,0.0004905023],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00215838,0.0007469591,0.007198649,0.001539255,0.0001391334,0.002100609,0.006757609,0.0002209036,0.975558,0.0000393453,0.0001153825,0.003425813],"study_design_scores_gemma":[0.0101124,0.000185249,0.14975,0.00297574,0.001185322,0.00008295301,0.0001696278,0.003662348,0.8307961,0.00006521923,0.0003922393,0.0006227235],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9846321,0.001710963,0.002690923,0.0001719213,0.0003168768,0.0007625211,0.001300446,0.0002290425,0.008185191],"genre_scores_gemma":[0.9902167,0.001344094,0.000845547,0.0008347487,0.0002026177,0.00009994936,0.006297677,0.00005696563,0.0001017059],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1447618,"threshold_uncertainty_score":0.9999348,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008551810756514866,"score_gpt":0.2302517769802695,"score_spread":0.2216999662237546,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}