{"id":"W3185068446","doi":"10.3390/foods10081717","title":"Integrated Phenotypic–Genotypic Analysis of Latilactobacillus sakei from Different Niches","year":2021,"lang":"en","type":"article","venue":"Foods","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Natural Science Foundation of China","keywords":"Lactobacillus sakei; Biology; Genetics; Ecological niche; Genetic diversity; Genome; CRISPR; Niche; Genotype; Gene; Bacteria; Lactic acid; Ecology; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005611757,0.0001418558,0.0003560303,0.00002304075,0.0000665777,0.00003445584,0.0001882031,0.0001112883,0.001980228],"category_scores_gemma":[0.00003802767,0.00005340765,0.0002386735,0.0008898416,0.00004204793,0.00003374815,0.00009429098,0.0001105085,0.00001074542],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002401676,"about_ca_system_score_gemma":0.00001038549,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002851986,"about_ca_topic_score_gemma":0.003204693,"domain_scores_codex":[0.9990196,0.00007469623,0.000263912,0.0002858339,0.0001606823,0.0001952658],"domain_scores_gemma":[0.9995002,0.0001255031,0.00009410416,0.0001106626,0.00009113509,0.00007839598],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007133382,0.0004321916,0.08252523,0.000006134218,0.001666871,0.000006842537,0.0001941502,0.00003984338,0.8420296,0.0009804369,0.0001579437,0.07188936],"study_design_scores_gemma":[0.0001541828,0.0001799219,0.9339913,0.00001697528,0.0005906325,3.445816e-7,0.0002884185,0.001372182,0.05806706,0.001042216,0.004095639,0.0002011632],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971446,0.0005797331,0.00006936322,0.0002774083,0.0001183849,0.00005674664,0.0004920082,0.00003537809,0.001226427],"genre_scores_gemma":[0.9983485,0.00005180254,0.0002004629,0.0001048552,0.00005676589,0.00000295435,0.0009752613,9.247836e-7,0.0002584377],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.851466,"threshold_uncertainty_score":0.9989321,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02280176806539386,"score_gpt":0.2120046072778411,"score_spread":0.1892028392124473,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}