{"id":"W3185832420","doi":"10.1016/j.meegid.2021.105018","title":"Campylobacter coli isolated in Brazil typed by core genome Multilocus Sequence Typing shows high genomic diversity in a global context","year":2021,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa do Estado de São Paulo; Public Health Agency of Canada","keywords":"Multilocus sequence typing; Context (archaeology); Biology; Campylobacter; Typing; Genetics; Whole genome sequencing; Genome; Campylobacter coli; Computational biology; Sequence (biology); Evolutionary biology; Genotype; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003012108,0.0003268331,0.0004095142,0.001122952,0.0005315674,0.0006325715,0.0002299796,0.0003521446,0.0009139212],"category_scores_gemma":[0.0009349911,0.0001982657,0.0002617046,0.00111537,0.0007358778,0.0002235694,0.0005051882,0.0003277542,0.0001430757],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007058918,"about_ca_system_score_gemma":0.0007220691,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04553735,"about_ca_topic_score_gemma":0.07338279,"domain_scores_codex":[0.9996688,0.00005186464,0.00001531918,0.000100464,0.00006165197,0.0001019198],"domain_scores_gemma":[0.9994047,0.0001328021,0.0001660812,0.0000532275,0.0001345305,0.0001087369],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00020456,0.0000462062,0.8693858,0.00006976601,0.00007055132,0.0004473492,0.001512428,0.0001575567,0.1183144,0.0002253589,0.00008860391,0.00947747],"study_design_scores_gemma":[0.000004118287,0.00009233176,0.9957973,0.00001489388,0.00002987212,0.0004823555,0.001255316,0.0001449095,0.001535586,0.00006927217,0.0005682913,0.000005879353],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982702,0.0002344214,0.0002312351,0.00005248421,0.000003161625,0.000007518665,0.0002035981,0.000004386804,0.000992941],"genre_scores_gemma":[0.9994141,0.00009992243,0.000192383,0.00002231798,0.000002444207,0.000002533829,0.0001577513,0.00000222215,0.0001063053],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04553735,"threshold_uncertainty_score":0.09054458,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03339285511630745,"score_gpt":0.2514043329710939,"score_spread":0.2180114778547865,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}