{"id":"W3186008135","doi":"10.3389/fcimb.2021.685861","title":"Meta-Analysis of Bovine Digital Dermatitis Microbiota Reveals Distinct Microbial Community Structures Associated With Lesions","year":2021,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Dermatology and Skin Diseases","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Canadian Dairy Commission; Alberta Agriculture and Forestry; University of Calgary","keywords":"Biology; Hypervariable region; Mycoplasma; Metagenomics; Fusobacterium; Fusobacteria; Microbiology; Treponema; Microbiome; Genetics; 16S ribosomal RNA; Bacteria; Virology; Bacteroidetes; Gene; Bacteroides","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002942786,0.0005231599,0.005922803,0.0009768878,0.0001775817,0.0000348455,0.0001445225,0.0007800845,0.0002229599],"category_scores_gemma":[0.0002347904,0.0003829846,0.001755917,0.00111032,0.0006143315,0.00007526713,0.0001444841,0.0009006427,0.000001905248],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001115125,"about_ca_system_score_gemma":0.0002081291,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009660221,"about_ca_topic_score_gemma":0.0001495541,"domain_scores_codex":[0.9967535,0.001408986,0.001011582,0.0004461443,0.00005521724,0.0003245932],"domain_scores_gemma":[0.998184,0.0003422154,0.0006895676,0.0005235758,0.0001590785,0.0001016127],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.0001488393,0.002697873,0.08723316,0.0151913,0.7769185,0.0005162315,0.0003350923,0.00000749264,0.0008242892,0.0000311498,0.09326254,0.02283358],"study_design_scores_gemma":[0.00130504,0.0002526213,0.004379228,0.001605818,0.6464546,0.001193805,0.00005911954,0.000003626762,0.0001279195,0.00003830725,0.343852,0.0007278601],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01368083,0.9820993,0.0006556661,0.00002588439,0.0003255341,0.0005740367,0.002486852,0.00003065993,0.0001212622],"genre_scores_gemma":[0.04411409,0.9248371,0.000399275,0.0001696556,0.00003269497,0.00004720502,0.02978919,0.00006110529,0.0005496615],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.2505895,"threshold_uncertainty_score":0.9998622,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04559014577192726,"score_gpt":0.2898084841588026,"score_spread":0.2442183383868753,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}