{"id":"W3186973394","doi":"10.3390/microorganisms9081560","title":"Transcriptome Analysis of Durusdinium Associated with the Transition from Free-Living to Symbiotic","year":2021,"lang":"en","type":"article","venue":"Microorganisms","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Institute of Genetics; University of Tsukuba; Kurita Water and Environment Foundation","keywords":"Biology; Endosymbiosis; Transcriptome; Dinoflagellate; Symbiodinium; Gene; Phylogenetic tree; Symbiosis; Heat shock protein; Gene expression; Evolutionary biology; Genetics; Computational biology; Botany; Plastid; Bacteria; Chloroplast","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001181982,0.0001081998,0.0002527069,0.00003154587,0.0001210753,0.00002171957,0.0001813812,0.0000338928,0.001865899],"category_scores_gemma":[0.00003174724,0.00007382262,0.0000929791,0.001086123,0.00005375374,0.00005421073,0.0001152904,0.00006220754,0.00003926288],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007967744,"about_ca_system_score_gemma":0.000007684758,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001333968,"about_ca_topic_score_gemma":0.01862561,"domain_scores_codex":[0.9991735,0.00006570208,0.0001598488,0.00024268,0.000192981,0.0001652925],"domain_scores_gemma":[0.999536,0.00009295478,0.00005207541,0.0002554798,0.00002081691,0.00004269864],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000007279851,0.00008292586,0.02350416,0.000002849157,0.0005953596,0.000007787085,0.005419151,0.0001719009,0.9689682,0.00001148192,0.001078394,0.0001505468],"study_design_scores_gemma":[0.0002132278,0.00006996568,0.8603686,0.00003735588,0.001141895,0.000001647029,0.001643847,0.00008035911,0.1357839,0.00005032192,0.0004287151,0.0001801673],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959226,0.00004540335,0.001295736,0.001851434,0.000058102,0.00009586824,0.0001038184,0.00002497535,0.000602025],"genre_scores_gemma":[0.998825,0.00000400116,0.0001701459,0.000355757,0.00001326206,0.000004711252,0.00002673214,0.000009925993,0.0005904795],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8368644,"threshold_uncertainty_score":0.9992819,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005171029412493303,"score_gpt":0.1716623351261738,"score_spread":0.1664913057136805,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}