{"id":"W3187129507","doi":"10.1093/jac/dkab268","title":"Comparison of phenotypic antimicrobial susceptibility testing results and WGS-derived genotypic resistance profiles for a cohort of ESBL-producing <i>Escherichia coli</i> collected from Canadian hospitals: CANWARD 2007–18","year":2021,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Manitoba Health; Public Health Agency of Canada; University of Manitoba","funders":"","keywords":"Ciprofloxacin; Ceftriaxone; Broth microdilution; Sulfamethoxazole; Gentamicin; Trimethoprim; Microbiology; Antibiotic resistance; Genotype; Medicine; Biology; Minimum inhibitory concentration; Antibiotics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006001779,0.0005854253,0.0004582109,0.001317021,0.001447313,0.001165646,0.0006784772,0.0004967042,0.001522828],"category_scores_gemma":[0.001813231,0.0003339772,0.0003722193,0.001914069,0.0006445091,0.000255879,0.0004597461,0.0004779509,0.0003241372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.006981086,"about_ca_system_score_gemma":0.007086732,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8778356,"about_ca_topic_score_gemma":0.9210308,"domain_scores_codex":[0.9990119,0.00003837103,0.00004313693,0.0002706853,0.0003361395,0.0002996977],"domain_scores_gemma":[0.997741,0.0001483406,0.0003578984,0.0001360427,0.001227472,0.0003892979],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001711052,0.00003084852,0.9932417,0.00002292716,0.00005719704,0.0001355989,0.0004048468,0.00007637907,0.001706484,0.00002352523,0.0008621868,0.00326711],"study_design_scores_gemma":[0.000005325189,0.00006183219,0.997993,0.000008046457,0.00002453934,0.0001714257,0.0005402836,0.0001281584,0.000341677,0.000005629742,0.0007138093,0.000006373678],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957604,0.00009703308,0.0001265323,0.00005239861,0.000006487817,0.00003256872,0.003152625,0.00001059533,0.0007613836],"genre_scores_gemma":[0.9920116,0.0001682859,0.000383121,0.0001033575,0.000007000507,0.0000216494,0.006472007,0.00001147267,0.0008215202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1221644,"threshold_uncertainty_score":0.2457676,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01549951504902374,"score_gpt":0.2672664674489776,"score_spread":0.2517669523999538,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}