{"id":"W3188003502","doi":"10.3390/antibiotics10080972","title":"Whole-Genome Sequencing for Molecular Characterization of Carbapenem-Resistant Enterobacteriaceae Causing Lower Urinary Tract Infection among Pediatric Patients","year":2021,"lang":"en","type":"article","venue":"Antibiotics","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Qatar University","keywords":"Microbiology; Antibiotic resistance; Biology; Carbapenem-resistant enterobacteriaceae; Multilocus sequence typing; Enterobacteriaceae; Klebsiella pneumoniae; Population; Carbapenem; Antimicrobial; Pseudomonas aeruginosa; Whole genome sequencing; Antibiotics; Escherichia coli; Bacteria; Genotype; Genetics; Gene; Genome; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000139033,0.0002527412,0.0002927717,0.00008070223,0.00009889658,0.00005865426,0.000102417,0.0002496697,0.00001101431],"category_scores_gemma":[0.0001260405,0.0002830137,0.0001862666,0.000198848,0.00007258397,0.00002646314,0.0001090427,0.00008556134,0.000002268951],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006931693,"about_ca_system_score_gemma":0.0001634283,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008553984,"about_ca_topic_score_gemma":0.00001089323,"domain_scores_codex":[0.99841,0.000082694,0.0005101217,0.0004864009,0.0001783479,0.0003324669],"domain_scores_gemma":[0.9986323,0.0000134525,0.0003880263,0.0004444312,0.0004436059,0.00007823949],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007769872,0.0002579109,0.2927427,0.0001826359,0.00004175488,0.00002379799,0.00002335604,0.00002101995,0.7065873,0.00001031227,0.000005114337,0.00002645576],"study_design_scores_gemma":[0.0005072245,0.0004241309,0.6513237,0.00005611199,0.0001041989,0.000009786124,0.00001483771,0.00003165044,0.3467326,0.000006112358,0.0005355569,0.0002540742],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927335,0.00007488534,0.005836405,0.00001414549,0.000631683,0.0003628754,0.0002638117,0.00001711229,0.0000655546],"genre_scores_gemma":[0.9956237,0.000172375,0.0009516046,0.00005763349,0.0002438258,9.60565e-7,0.002720437,0.00006227696,0.0001671938],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3598547,"threshold_uncertainty_score":0.9999622,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00869845664408616,"score_gpt":0.2286088811607898,"score_spread":0.2199104245167036,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}