{"id":"W3188976149","doi":"10.1139/gen-2021-0038","title":"Differences between predicted outer membrane proteins of <i>Pasteurella multocida</i>, <i>Histophilus somni</i>, and genotype 1 and 2 <i>Mannheimia haemolytica</i> strains isolated from cattle","year":2021,"lang":"en","type":"article","venue":"Genome","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agricultural Research Service; U.S. Department of Agriculture","keywords":"Biology; Pasteurella multocida; Genotype; Microbiology; Genome; Bacterial outer membrane; Bovine respiratory disease; Pasteurellosis; Pasteurellaceae; Strain (injury); Gene; Bacteria; Virology; Genetics; Haemophilus influenzae; Escherichia coli; Antibiotics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001946408,0.0002665681,0.000241861,0.0004830843,0.0002091669,0.0004463607,0.0001374553,0.0002979181,0.001006381],"category_scores_gemma":[0.0006253571,0.0001082829,0.0003223311,0.0005391047,0.0001313468,0.0002698787,0.0002942891,0.000332622,0.0002016759],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002442002,"about_ca_system_score_gemma":0.0002502598,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00168768,"about_ca_topic_score_gemma":0.002583433,"domain_scores_codex":[0.9998,0.00002265865,0.00001621507,0.00006966142,0.00004146437,0.00004997457],"domain_scores_gemma":[0.9994527,0.0001260162,0.0002423546,0.00003424503,0.00006835997,0.0000763312],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008998065,0.0001024135,0.06595246,0.0001746219,0.00006309561,0.0001800347,0.0002664658,0.0003010373,0.9210755,0.0001591134,0.0002708598,0.01055457],"study_design_scores_gemma":[0.0000176316,0.0004465629,0.911527,0.00003480024,0.0001064827,0.001282057,0.0003801536,0.001750303,0.08053084,0.0001845493,0.003719143,0.00002044367],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958764,0.0003330969,0.0009044759,0.00003920585,0.00001379341,0.00001010263,0.002191267,0.00002055166,0.0006111379],"genre_scores_gemma":[0.9888384,0.0001668999,0.003097737,0.00005595163,0.000008573844,0.000009677588,0.007403098,0.00001362683,0.0004060148],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00168768,"threshold_uncertainty_score":0.003366709,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01828973926400898,"score_gpt":0.2356406275442996,"score_spread":0.2173508882802906,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}