{"id":"W3189113075","doi":"10.1111/mec.16105","title":"Geographic contact drives increased reproductive isolation in two cryptic <i>Empidonax</i> flycatchers","year":2021,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"University of Toronto Scarborough; Natural Sciences and Engineering Research Council of Canada; Secretaría de Educación Superior, Ciencia, Tecnología e Innovación","keywords":"Reproductive isolation; Biology; Sympatric speciation; Incipient speciation; Character displacement; Sympatry; Introgression; Ecological speciation; Evolutionary biology; Coalescent theory; Hybrid zone; Context (archaeology); Genetic algorithm; Allopatric speciation; Ecology; Species complex; Zoology; Population; Genetic variation; Phylogenetics; Gene flow; Genetics; Phylogenetic tree; Demography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001911745,0.0001256184,0.0001300095,0.0003844271,0.0003002912,0.0003217987,0.0002644095,0.0002697303,0.001121979],"category_scores_gemma":[0.000263974,0.0001262121,0.0001477422,0.0001337186,0.0002513552,0.0001773603,0.0003596279,0.0002836618,0.0001325743],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003474955,"about_ca_system_score_gemma":0.0001122441,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003109734,"about_ca_topic_score_gemma":0.01153259,"domain_scores_codex":[0.9999218,0.00001296111,0.000004429842,0.00003984072,0.000008334137,0.00001258846],"domain_scores_gemma":[0.9998436,0.00003610792,0.00006423472,0.00001360109,0.00001051806,0.00003194777],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003087253,0.0001580951,0.6287607,0.00005868176,0.0001362508,0.0004071423,0.001030493,0.001768222,0.3551933,0.0009034319,0.0002361965,0.0110388],"study_design_scores_gemma":[0.000006495532,0.00004744256,0.9943199,0.000004301325,0.00001602475,0.0001573443,0.0001741162,0.002859989,0.001956256,0.0001298482,0.0003218116,0.000006427857],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997067,0.00001160791,0.0001056736,0.000006426591,3.529424e-7,8.791729e-7,0.00002375707,0.00000349453,0.0001410903],"genre_scores_gemma":[0.9994935,0.00001257275,0.0002134557,0.00001695935,7.714703e-7,0.000002793597,0.00008517349,0.000003259044,0.0001715816],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003109734,"threshold_uncertainty_score":0.006183267,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005970203786487435,"score_gpt":0.2388032141592154,"score_spread":0.2328330103727279,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}