{"id":"W3189168014","doi":"10.1038/s41467-021-24958-0","title":"Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration","year":2021,"lang":"en","type":"article","venue":"Nature Communications","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Medical Research Council; Wellcome Trust; Wellcome","keywords":"Praziquantel; Schistosoma mansoni; Biology; Schistosomiasis; Mass drug administration; Schistosoma; Genome; Population; Genetics; Immunology; Helminths; Gene; Medicine; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001280136,0.0001514582,0.0002123019,0.000250369,0.0001860401,0.000256055,0.0001034562,0.0001984438,0.0007747429],"category_scores_gemma":[0.000541576,0.000113478,0.000152387,0.0004702077,0.0002574241,0.00009855358,0.0002309837,0.0002802529,0.0001418999],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001942946,"about_ca_system_score_gemma":0.0002417497,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003099713,"about_ca_topic_score_gemma":0.01145584,"domain_scores_codex":[0.9998826,0.00001997123,0.00000536355,0.00003998364,0.00002950985,0.00002247232],"domain_scores_gemma":[0.9997376,0.00008564477,0.00009366028,0.00002349365,0.0000236154,0.00003604066],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003773443,0.00002094235,0.113927,0.0001761508,0.0001433545,0.0004382786,0.0006873779,0.0005624301,0.8694234,0.0001200471,0.0002066796,0.01391696],"study_design_scores_gemma":[0.000008424569,0.0001420693,0.9854221,0.00001538341,0.00005192076,0.00047541,0.0002377216,0.000547695,0.01086439,0.00007586814,0.002152014,0.000007022101],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986362,0.0001965599,0.0002952155,0.00002797128,0.000001540474,0.00000297162,0.0006092826,0.000008555388,0.0002216302],"genre_scores_gemma":[0.9977846,0.0001695305,0.0005754224,0.00003589781,0.000001864368,0.000004359685,0.00106832,0.000007778222,0.0003522919],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003099713,"threshold_uncertainty_score":0.006163359,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02230007800633644,"score_gpt":0.2868327097979553,"score_spread":0.2645326317916189,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}