{"id":"W3189371181","doi":"10.1101/2021.08.01.454614","title":"Large differences in carbohydrate degradation and transport potential in the genomes of lichen fungal symbionts","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Directorate for Biological Sciences; Natural Sciences and Engineering Research Council of Canada; Ludwig-Maximilians-Universität München; Vetenskapsrådet; Austrian Science Fund; Deutsche Forschungsgemeinschaft; University of Alberta","keywords":"Lichen; Biology; Symbiosis; Ascomycota; Fungus; Genome; Clade; Botany; Gene; Phylogenetics; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001798081,0.0003134825,0.0004182846,0.001050161,0.0003727592,0.0008422703,0.0001567794,0.0003784468,0.001142093],"category_scores_gemma":[0.0009170596,0.0001631721,0.0004450096,0.001176944,0.0002044015,0.0004476068,0.0005218377,0.0003125074,0.0004162811],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002612516,"about_ca_system_score_gemma":0.0001737017,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007867233,"about_ca_topic_score_gemma":0.00116955,"domain_scores_codex":[0.9997711,0.00002139503,0.00001745377,0.0001042445,0.00004218377,0.00004375288],"domain_scores_gemma":[0.999106,0.000324804,0.000256246,0.00008707328,0.00007619985,0.000149708],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007000421,0.00005126494,0.1538909,0.0005887706,0.0002147289,0.0004064569,0.0008841305,0.0006936229,0.8198275,0.0003426692,0.0002651442,0.02213481],"study_design_scores_gemma":[0.00002366724,0.000180448,0.9660605,0.00007947755,0.0001493105,0.001059237,0.0005399615,0.002091363,0.02354412,0.0003839014,0.005846463,0.00004144905],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956679,0.0005994377,0.000467167,0.00002580944,0.000004176236,0.000003354576,0.002771183,0.0000396138,0.0004213521],"genre_scores_gemma":[0.9902172,0.0002915883,0.001272136,0.00003913127,0.000008126072,0.00001325673,0.007700232,0.00002920172,0.0004291825],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001142093,"threshold_uncertainty_score":0.003820658,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01399629925130909,"score_gpt":0.1892155117461421,"score_spread":0.175219212494833,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}