{"id":"W3189492453","doi":"10.1371/journal.pcbi.1004763","title":"Ancestral Reconstruction","year":2016,"lang":"en","type":"article","venue":"PLoS Computational Biology","topic":"Rangeland Management and Livestock Ecology","field":"Environmental Science","cited_by":202,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia; AIDS Vancouver","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Universities Space Research Association; Simon Fraser University; Providence Health Care; St. Paul's Foundation; Bill and Melinda Gates Foundation","keywords":"Evolutionary biology; Computational biology; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001291442,0.0006712804,0.000710125,0.001702532,0.001493277,0.002530487,0.001569798,0.001798402,0.0689625],"category_scores_gemma":[0.01441845,0.0007109183,0.001479122,0.001583619,0.001436678,0.002648819,0.002299128,0.00298574,0.01436191],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006661155,"about_ca_system_score_gemma":0.001157518,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001570027,"about_ca_topic_score_gemma":0.002485438,"domain_scores_codex":[0.999195,0.0002448358,0.00003225282,0.0003446356,0.00009597623,0.0000871731],"domain_scores_gemma":[0.9974896,0.0009640797,0.00005998687,0.001111863,0.000258869,0.0001156836],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0005474227,0.00008309413,0.008473431,0.0003333695,0.0002979198,0.0008162807,0.001063257,0.06912276,0.002635012,0.7276112,0.06710704,0.1219092],"study_design_scores_gemma":[0.0001064059,0.00003582607,0.002000555,0.0001518861,0.0001284796,0.0008182836,0.0003427144,0.1616608,0.00158067,0.7688088,0.06431495,0.00005067625],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1205798,0.0009913999,0.6932883,0.004497834,0.001534172,0.000207182,0.03073872,0.007265708,0.140897],"genre_scores_gemma":[0.689882,0.0007359405,0.2229221,0.001155519,0.0004382127,0.0003542269,0.04587821,0.004535104,0.03409871],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.0689625,"threshold_uncertainty_score":0.2307025,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0140338620024843,"score_gpt":0.218436811605148,"score_spread":0.2044029496026637,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}