{"id":"W3190432843","doi":"10.1038/s41559-021-01573-2","title":"Plasmids do not consistently stabilize cooperation across bacteria but may promote broad pathogen host-range","year":2021,"lang":"en","type":"article","venue":"Nature Ecology & Evolution","topic":"Evolutionary Game Theory and Cooperation","field":"Social Sciences","cited_by":48,"is_retracted":false,"has_abstract":false,"ca_institutions":"Western University","funders":"Biotechnology and Biological Sciences Research Council; Natural Environment Research Council; Sight Research UK","keywords":"Plasmid; Horizontal gene transfer; Biology; Gene; Genetics; Virulence; Bacteria; Host (biology); Population; Pathogen; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001566234,0.0002418066,0.0003170836,0.00006941092,0.001665286,0.0001611919,0.0002433738,0.001231443,0.001338819],"category_scores_gemma":[0.001359042,0.0002587136,0.0001318442,0.0005577064,0.0005564621,0.0007025714,0.00009776426,0.0007438894,0.0002602675],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008100693,"about_ca_system_score_gemma":0.001064116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001021693,"about_ca_topic_score_gemma":0.009020466,"domain_scores_codex":[0.9963847,0.001481457,0.0004244634,0.0006549617,0.0004109695,0.0006434731],"domain_scores_gemma":[0.9980539,0.0002440393,0.000175494,0.0003401535,0.001031263,0.0001551427],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001035293,0.001057403,0.07548006,0.00008569752,0.0002207987,0.0001510787,0.01491073,0.0002869769,0.4506104,0.4483376,0.005073662,0.002750322],"study_design_scores_gemma":[0.003235467,0.0006254319,0.8491734,0.00009446171,0.0002007615,0.0001823932,0.009900213,0.0006712184,0.011881,0.005735602,0.117019,0.001281058],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9875751,0.0009017542,0.0002304364,0.004472811,0.00254777,0.0006425056,0.0002645141,0.000194306,0.003170816],"genre_scores_gemma":[0.992287,0.0001682958,0.0005425393,0.0006820589,0.0007004003,0.00009660582,0.000296299,0.00002213009,0.005204658],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7736934,"threshold_uncertainty_score":0.9999865,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01115145566810379,"score_gpt":0.293567829448327,"score_spread":0.2824163737802233,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}