{"id":"W3193761890","doi":"10.1371/journal.pgen.1009669","title":"Genomic islands targeting dusA in Vibrio species are distantly related to Salmonella Genomic Island 1 and mobilizable by IncC conjugative plasmids","year":2021,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec – Nature et technologies; Canadian Institutes of Health Research","keywords":"Genomic island; Biology; Plasmid; Genetics; Vibrio cholerae; Gene; Genome; Salmonella; Extrachromosomal DNA; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001317219,0.0002832685,0.0003498254,0.00005123087,0.00009477267,0.00009504907,0.000193474,0.0002385096,0.00007763934],"category_scores_gemma":[0.0001276757,0.000303952,0.00005010447,0.0001712654,0.0001437621,0.000005697662,0.0003182917,0.0001554669,0.00001878756],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006682092,"about_ca_system_score_gemma":0.0001145662,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004543471,"about_ca_topic_score_gemma":0.0001921128,"domain_scores_codex":[0.998209,0.0000880994,0.0004564424,0.0006791469,0.000144371,0.00042295],"domain_scores_gemma":[0.9991943,0.00003924176,0.0001444279,0.0003794371,0.0001085643,0.0001339918],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007492465,0.00006236153,0.245334,0.00003792371,0.00006054362,0.00002209261,0.0003192603,0.0001453846,0.7520793,0.000007152897,0.001840489,0.00001652952],"study_design_scores_gemma":[0.001130468,0.0002257708,0.07950144,0.0001020457,0.00004330946,0.00002385984,0.001644158,0.0006838549,0.9035452,0.0001411476,0.01233941,0.0006193562],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938822,0.004077662,0.00009088888,0.00009237236,0.0001132193,0.000286045,0.0002938783,0.00001267855,0.001151053],"genre_scores_gemma":[0.9944952,0.001808108,0.001014512,0.0001709049,0.00008262824,0.000009603475,0.0003519509,0.00005943529,0.002007625],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1658326,"threshold_uncertainty_score":0.9999412,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007388424187835144,"score_gpt":0.214894628522346,"score_spread":0.2075062043345109,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}