{"id":"W3194436560","doi":"10.1089/crispr.2021.0026","title":"Induction and Elimination of Prophages Using CRISPR Interference","year":2021,"lang":"en","type":"article","venue":"The CRISPR Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Prophage; Lysogenic cycle; Repressor; Biology; SOS response; Genetics; CRISPR interference; Escherichia coli; Lysogen; Bacteriophage; Genome; Cas9; Gene; Transcription factor","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001684872,0.00005404149,0.0000669915,0.00001820828,0.0001911897,0.00006022252,0.00007593772,0.00002520969,0.001213533],"category_scores_gemma":[0.00003932697,0.00003736035,0.00002980199,0.00009073366,0.0001012798,0.0002872551,0.00009472189,0.0001940494,0.00001156938],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005277638,"about_ca_system_score_gemma":0.00001256429,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007022366,"about_ca_topic_score_gemma":0.00002390644,"domain_scores_codex":[0.999525,0.00007356186,0.0001530844,0.00008201273,0.00007726165,0.00008907029],"domain_scores_gemma":[0.9997186,0.00001841044,0.0001148347,0.00008340702,0.00003251784,0.00003222587],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000008678584,0.00002685108,0.0002892305,0.00000366066,0.000007529719,0.000004995164,0.0006703,0.00005455978,0.9853849,0.00002207658,0.000310072,0.01321713],"study_design_scores_gemma":[0.0002390407,0.00009059338,0.1526378,0.00008811084,0.00007415531,0.003132734,0.002212928,0.0007052955,0.8382757,0.0006815537,0.001738935,0.0001231282],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929505,0.0001296772,0.005167438,0.0009155704,0.000299151,0.0000372714,0.000001598088,0.000003741822,0.0004950516],"genre_scores_gemma":[0.9983963,0.0001342619,0.001037021,0.00006766969,0.00006659832,5.652548e-7,4.754156e-7,0.000004597494,0.0002925332],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1523486,"threshold_uncertainty_score":0.9996995,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02457734727006742,"score_gpt":0.2834737434442436,"score_spread":0.2588963961741762,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}