{"id":"W3194515707","doi":"10.1016/j.vaccine.2021.08.061","title":"Whole genome characterization of Streptococcus pneumoniae from respiratory and blood cultures collected from Canadian hospitals before and after PCV-13 implementation in Canada: Focus on serotypes 22F and 33F from CANWARD 2007–2018","year":2021,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"ca_institutions":"Health Sciences Centre; Manitoba Health; Public Health Agency of Canada; University of Manitoba","funders":"Merck Canada","keywords":"Streptococcus pneumoniae; Serotype; Multilocus sequence typing; Pneumococcal conjugate vaccine; Biology; Virology; Microbiology; Population; Genotype; Genetics; Gene; Medicine; Antibiotics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003187405,0.0005596496,0.0005774279,0.00176219,0.001597929,0.001220495,0.0004825744,0.0005085897,0.001645785],"category_scores_gemma":[0.0009780336,0.0002955066,0.0008106155,0.004404907,0.00045617,0.0001808216,0.0005624439,0.0007703395,0.0004250975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.007213902,"about_ca_system_score_gemma":0.01860882,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9524775,"about_ca_topic_score_gemma":0.9673822,"domain_scores_codex":[0.9990968,0.00002035409,0.00003865115,0.0001748304,0.0003250217,0.0003443734],"domain_scores_gemma":[0.9989226,0.00005803964,0.0001066089,0.00002973866,0.0007327894,0.0001502001],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009001892,0.0001177197,0.859621,0.0005768624,0.0004218164,0.0008659294,0.004278843,0.000894042,0.08373703,0.0004752543,0.017018,0.03109336],"study_design_scores_gemma":[0.000004730897,0.00003251546,0.989853,0.00003885072,0.00004256244,0.0001411059,0.001134184,0.0001075843,0.001424626,0.0000154395,0.007193953,0.00001137958],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8767331,0.002794028,0.0007089387,0.000835259,0.0001028952,0.0001149008,0.1136891,0.00007822433,0.004943546],"genre_scores_gemma":[0.8981091,0.002505792,0.002806835,0.001223296,0.00004190191,0.0001120096,0.08686626,0.00007542688,0.00825938],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04752254,"threshold_uncertainty_score":0.09560478,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004844888929473797,"score_gpt":0.2239015503567129,"score_spread":0.2190566614272391,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}