{"id":"W3194928289","doi":"10.1038/s41541-021-00358-9","title":"Haplotype-resolved de novo assembly of the Vero cell line genome","year":2021,"lang":"en","type":"article","venue":"npj Vaccines","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill Genome Centre; McGill University","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada; McGill University","keywords":"Vero cell; Biology; Genome; Virology; Gene; Virus; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001763713,0.000112148,0.0001269017,0.00002171616,0.00005941635,0.00001365179,0.0003273004,0.0001089545,0.0001094522],"category_scores_gemma":[0.00008805134,0.00008647177,0.0001154454,0.0001608124,0.00002322019,0.00000182761,0.0001944881,0.00009822928,0.00001337945],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001310617,"about_ca_system_score_gemma":0.0002553996,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000102441,"about_ca_topic_score_gemma":0.0002751447,"domain_scores_codex":[0.9991164,0.0001059293,0.0001602271,0.0002339087,0.0001400864,0.000243497],"domain_scores_gemma":[0.9990934,0.00001693927,0.00005386804,0.000585266,0.0001931349,0.00005740993],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003165713,0.00008692233,0.002279559,0.00002461277,0.00003805129,0.000005150185,0.00002328237,0.0001935256,0.9957998,0.000005236693,0.0005276141,0.0006996944],"study_design_scores_gemma":[0.0006482416,0.0005232359,0.004331423,0.00000600261,0.00001334387,0.0000100446,0.0000237988,0.00003897222,0.9847311,0.00003516579,0.009542725,0.00009595926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950501,0.002987051,0.0001639172,0.0005464979,0.00008906578,0.0001038805,0.00001873204,0.000008026705,0.001032769],"genre_scores_gemma":[0.9949831,0.0003435929,0.0002385606,0.0004763792,0.0002693073,0.000009830776,0.00003534854,0.0000282601,0.003615649],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01106869,"threshold_uncertainty_score":0.3526216,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01641256420677518,"score_gpt":0.2817029492657251,"score_spread":0.26529038505895,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}