{"id":"W3194990160","doi":"10.1128/msphere.00650-21","title":"RNase III and RNase E Influence Posttranscriptional Regulatory Networks Involved in Virulence Factor Production, Metabolism, and Regulatory RNA Processing in Bordetella pertussis","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Simon Fraser University; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; RNase P; Transcriptome; Bordetella pertussis; Virulence; Gene; RNA; Genetics; Regulon; Gene expression; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001816,0.0002047119,0.0003041396,0.00008585946,0.000191466,0.0000511672,0.00006950722,0.000263764,0.0002370672],"category_scores_gemma":[0.0000820578,0.0001954083,0.0000345244,0.0003210143,0.0001862072,0.0004076664,0.00006024833,0.0003396165,0.000003517158],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003958822,"about_ca_system_score_gemma":0.0001320219,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003038699,"about_ca_topic_score_gemma":0.001746282,"domain_scores_codex":[0.9986618,0.0001778321,0.0003650856,0.0004818432,0.0000278637,0.0002855627],"domain_scores_gemma":[0.999485,0.00003007986,0.00009217057,0.0002144697,0.0001391542,0.00003916692],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001689181,0.0001314261,0.06649191,0.00006985496,0.00002778771,0.000008834071,0.0006316227,0.0001840348,0.917132,0.0001539644,0.0001550981,0.01484459],"study_design_scores_gemma":[0.001479126,0.00003099511,0.9450916,0.0002350182,0.00002874224,0.0001052796,0.0005193581,0.00006714719,0.04606677,0.0001177443,0.005945039,0.0003131836],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9684984,0.03046449,0.00001716379,0.00031073,0.0004568715,0.0001670712,0.00001160255,0.00003958395,0.00003406106],"genre_scores_gemma":[0.9981042,0.001068039,0.00008166974,0.0001184995,0.00007984237,0.00002658637,0.00002683216,0.00001757252,0.0004767696],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8785997,"threshold_uncertainty_score":0.7968521,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01056673210483099,"score_gpt":0.2241794983451713,"score_spread":0.2136127662403403,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}