{"id":"W3195306693","doi":"10.1007/s13258-021-01146-4","title":"A comprehensive analysis of gorilla-specific LINE-1 retrotransposons","year":2021,"lang":"en","type":"article","venue":"Genes & Genomics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"Brock University","funders":"Ministry of Education","keywords":"Gorilla; Biology; Retrotransposon; Genome; ORFS; Genetics; Evolutionary biology; Subfamily; Gene; Transposable element; Open reading frame; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003791649,0.00009672562,0.0002508679,0.00001857112,0.0001061262,0.00002159998,0.0001395355,0.00006859275,0.0006553498],"category_scores_gemma":[0.000004696889,0.00004588954,0.0002540851,0.0009603642,0.0000354497,0.00001650262,0.00004832634,0.00004475632,0.00001856589],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001859642,"about_ca_system_score_gemma":0.00001795407,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005323755,"about_ca_topic_score_gemma":0.0006733325,"domain_scores_codex":[0.9991964,0.00004281945,0.0002372572,0.0002502293,0.0001140372,0.0001592388],"domain_scores_gemma":[0.9994866,0.00009534731,0.00007224372,0.0001010936,0.0001814684,0.00006326495],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001063649,0.00004425486,0.004652857,0.000002882634,0.000218639,0.000004285464,0.0001205027,0.001581555,0.940826,0.000351017,0.00002929412,0.05215811],"study_design_scores_gemma":[0.000114424,0.00007728405,0.4089881,0.000003457942,0.0003419165,0.000005995204,0.0003698504,0.0005733981,0.09022956,0.0003241713,0.4987867,0.0001851741],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957562,0.002659828,0.00004618359,0.0006683767,0.000128965,0.00006421957,0.0004493932,0.00001860529,0.0002082233],"genre_scores_gemma":[0.9958044,0.001918813,0.001283329,0.0001563459,0.0002196979,0.000004644584,0.0004119471,9.603918e-7,0.0001998242],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8505964,"threshold_uncertainty_score":0.717562,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03505538003835027,"score_gpt":0.2277739331737262,"score_spread":0.192718553135376,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}