{"id":"W3195542925","doi":"10.1128/msystems.00816-21","title":"Embracing Metagenomic Complexity with a Genome-Free Approach","year":2021,"lang":"en","type":"article","venue":"mSystems","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"","keywords":"Metagenomics; Microbiome; Genome; Computational biology; Biology; Genomics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006026537,0.001011132,0.001191363,0.002261202,0.001457171,0.004656559,0.003581165,0.003337264,0.0028365],"category_scores_gemma":[0.01472551,0.0006063493,0.00172311,0.001840396,0.00790058,0.01009651,0.003767418,0.008499368,0.0007942053],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002759212,"about_ca_system_score_gemma":0.001764312,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001920941,"about_ca_topic_score_gemma":0.003892441,"domain_scores_codex":[0.9978877,0.001020608,0.00007702536,0.0004445911,0.0004925415,0.00007750758],"domain_scores_gemma":[0.9906796,0.006574879,0.0003638295,0.001542375,0.0005702739,0.0002690137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.00003900853,0.00001206748,0.0004141989,0.000350548,0.0001369171,0.0001538166,0.000493617,0.01357397,0.001675803,0.9402506,0.01073193,0.03216765],"study_design_scores_gemma":[0.000004762024,0.000006887134,0.0001298824,0.00005570145,0.00002221732,0.00006448935,0.00009224732,0.01162782,0.0003511604,0.9530419,0.03458722,0.0000155919],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.004464672,0.006131392,0.9178277,0.06002701,0.002748582,0.00004675196,0.0003515796,0.000681564,0.007720875],"genre_scores_gemma":[0.3011159,0.01487088,0.6375681,0.03144371,0.006355828,0.0004184708,0.000812034,0.001066624,0.006348431],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.006026537,"threshold_uncertainty_score":0.03187174,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02596986541416883,"score_gpt":0.2191006067977891,"score_spread":0.1931307413836202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}