{"id":"W3195542925","doi":"10.1128/msystems.00816-21","title":"Embracing Metagenomic Complexity with a Genome-Free Approach","year":2021,"lang":"en","type":"article","venue":"mSystems","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"","keywords":"Metagenomics; Microbiome; Genome; Computational biology; Biology; Genomics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000145291,0.0001663286,0.0002359365,0.00002033666,0.0001295751,0.00004262972,0.000221422,0.00006868285,0.000007285947],"category_scores_gemma":[0.0000196251,0.0001418601,0.00007987701,0.00008581131,0.0000713343,4.553434e-7,0.0002449406,0.00005818144,0.000009019112],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001534015,"about_ca_system_score_gemma":0.00008054639,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004033485,"about_ca_topic_score_gemma":0.0001043125,"domain_scores_codex":[0.9989721,0.00007204557,0.0001847902,0.0004163812,0.0001080685,0.0002465775],"domain_scores_gemma":[0.9990826,0.000006188179,0.00007355082,0.0006787742,0.00008887464,0.00007006609],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000434036,0.00006414205,0.001945883,0.00009092795,0.000364235,0.00001186183,0.0001813573,0.0005051116,0.9952796,0.0009976415,0.000421441,0.00009446291],"study_design_scores_gemma":[0.006225064,0.0008496521,0.08672479,0.00007174125,0.0004020172,0.00129475,0.004626257,0.0005269824,0.3184734,0.001507174,0.5769373,0.002360969],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.950667,0.007291398,0.002623384,0.00007528583,0.000173515,0.0002216392,0.00006602446,0.000008287584,0.03887348],"genre_scores_gemma":[0.9938647,0.0000498811,0.003908401,0.0001207788,0.0003756028,0.00003733623,0.00009166282,0.00002842691,0.001523192],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6768062,"threshold_uncertainty_score":0.5784887,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02596986541416883,"score_gpt":0.2191006067977891,"score_spread":0.1931307413836202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}