{"id":"W3195614140","doi":"10.3390/v13081643","title":"The Role of Phylogenetics in Unravelling Patterns of HIV Transmission towards Epidemic Control: The Quebec Experience (2002–2020)","year":2021,"lang":"en","type":"article","venue":"Viruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; Centre Hospitalier de l’Université de Montréal; McGill University; Jewish General Hospital","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; Fonds de recherche du Québec – Nature et technologies; Université de Montréal; McGill University Health Centre; McGill University; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Viral phylodynamics; Transmission (telecommunications); Demographics; Phylogenetics; Cluster (spacecraft); Men who have sex with men; Human immunodeficiency virus (HIV); Evolutionary biology; Demography; Phylogenetic tree; Biology; Virology; Genetics; Gene; Computer science; Sociology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007309923,0.0003722193,0.0003563577,0.002081189,0.002426793,0.002697656,0.001320942,0.0007401864,0.003353985],"category_scores_gemma":[0.01352042,0.0002134371,0.000293532,0.004428639,0.001717663,0.001732055,0.001272806,0.001494599,0.0002242902],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.03185482,"about_ca_system_score_gemma":0.02824735,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9869676,"about_ca_topic_score_gemma":0.9843988,"domain_scores_codex":[0.9984175,0.000542196,0.00006258098,0.000232062,0.00045292,0.0002927085],"domain_scores_gemma":[0.9892142,0.002434673,0.001043415,0.0005217415,0.005686915,0.001099092],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004055471,0.00007684786,0.4594533,0.0008794973,0.0002513169,0.0004381811,0.01459727,0.006648168,0.001796222,0.01667647,0.04396762,0.4548095],"study_design_scores_gemma":[0.00002203786,0.0001266799,0.8079573,0.001081217,0.00009753969,0.0002818021,0.005763066,0.01034315,0.0007279566,0.00228449,0.1712154,0.00009929459],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7021599,0.1061209,0.02164919,0.07791193,0.0009007535,0.000265765,0.02418616,0.0004397682,0.0663657],"genre_scores_gemma":[0.9626222,0.01427908,0.008331722,0.003055715,0.0001686865,0.00006880875,0.003715184,0.00007544272,0.007683216],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03185482,"threshold_uncertainty_score":0.231124,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01777536183655368,"score_gpt":0.2770287735569529,"score_spread":0.2592534117203992,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}