{"id":"W3195937633","doi":"10.1007/978-1-0716-1518-8_8","title":"Whole-Genome Sequencing of Pathogens in Saliva: A Target-Enrichment Approach for SARS-CoV-2","year":2021,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Coronavirus; Genome; Virology; Isolation (microbiology); Biology; Pandemic; Outbreak; Whole genome sequencing; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Severe acute respiratory syndrome; Computational biology; Coronavirus disease 2019 (COVID-19); Medicine; Genetics; Gene; Disease; Bioinformatics; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005029294,0.0009084655,0.0009825428,0.0008394056,0.0005747437,0.001062526,0.0003982248,0.0009503111,0.001239009],"category_scores_gemma":[0.00102598,0.0004392331,0.001180321,0.0006420733,0.0002359888,0.000383393,0.000828037,0.001190114,0.001151827],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002910247,"about_ca_system_score_gemma":0.0007533043,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001955187,"about_ca_topic_score_gemma":0.005761927,"domain_scores_codex":[0.9993716,0.00009841723,0.00003141927,0.000221538,0.0002008137,0.0000761452],"domain_scores_gemma":[0.9996506,0.0001151,0.00004402921,0.00004362079,0.0001115674,0.00003518519],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001826669,0.00007183061,0.004601952,0.0002328027,0.0001251994,0.00007459806,0.0001078373,0.0006776333,0.975875,0.0001996454,0.0009444024,0.01690645],"study_design_scores_gemma":[0.00008246201,0.0007380436,0.1357252,0.0001424995,0.0007443701,0.001422937,0.0006300489,0.04508708,0.7763772,0.00219764,0.0367335,0.0001189764],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.7768278,0.004905347,0.178094,0.001102373,0.0003555084,0.0005816584,0.02887875,0.003076328,0.006178178],"genre_scores_gemma":[0.7098154,0.002505984,0.2370459,0.001902563,0.0001299063,0.0004871183,0.04001299,0.000884638,0.007215539],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001955187,"threshold_uncertainty_score":0.004144847,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08670521356868063,"score_gpt":0.4107030442366619,"score_spread":0.3239978306679813,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}