{"id":"W3196275782","doi":"10.1128/msphere.00083-21","title":"Exposure to Parasitic Protists and Helminths Changes the Intestinal Community Structure of Bacterial Communities in a Cohort of Mother-Child Binomials from a Semirural Setting in Mexico","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Université de Sherbrooke; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Biology; Entamoeba coli; Ascaris lumbricoides; Microbiology; Prevotella; Blastocystis; Entamoeba histolytica; Helminths; Zoology; Feces; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001692635,0.0002482554,0.0001973857,0.0003569912,0.0007275867,0.0005599358,0.0002859074,0.0002506884,0.001121078],"category_scores_gemma":[0.0005829723,0.0002450707,0.0001816353,0.0003298341,0.0003082855,0.0002559947,0.000474633,0.000335566,0.0001015817],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005724247,"about_ca_system_score_gemma":0.0004351031,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.05256845,"about_ca_topic_score_gemma":0.0853827,"domain_scores_codex":[0.9998714,0.00002208254,0.000006474924,0.00003674818,0.00001752752,0.00004581613],"domain_scores_gemma":[0.999767,0.00002285304,0.0001165314,0.00001480713,0.00003277576,0.00004597701],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008050176,0.00004674693,0.9957104,0.000015239,0.00001937544,0.0001396742,0.001091703,0.000007925916,0.001047259,0.0000209813,0.0001050605,0.001715198],"study_design_scores_gemma":[0.000002797908,0.0000761375,0.9977858,0.000008455059,0.00001217967,0.0001416989,0.001665822,0.00003161229,0.00006935751,0.000007276667,0.0001972865,0.000001510424],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996897,0.00005751798,0.00002589754,0.0000235876,0.000001358146,0.000002974091,0.00009015092,9.552713e-7,0.0001078008],"genre_scores_gemma":[0.9993443,0.0001430855,0.00008654295,0.00002687539,0.000003261157,0.000006829753,0.0001464997,0.000001286321,0.000241358],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05256845,"threshold_uncertainty_score":0.104525,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01076565850135333,"score_gpt":0.2453272327433917,"score_spread":0.2345615742420384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}