{"id":"W3196275782","doi":"10.1128/msphere.00083-21","title":"Exposure to Parasitic Protists and Helminths Changes the Intestinal Community Structure of Bacterial Communities in a Cohort of Mother-Child Binomials from a Semirural Setting in Mexico","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Université de Sherbrooke; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Biology; Entamoeba coli; Ascaris lumbricoides; Microbiology; Prevotella; Blastocystis; Entamoeba histolytica; Helminths; Zoology; Feces; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002466271,0.0001277095,0.0003374472,0.000045453,0.0001158937,0.00001252883,0.0001493682,0.0001428711,0.0005758221],"category_scores_gemma":[0.0004030419,0.0001039476,0.00002563908,0.0001413381,0.0002275646,0.00002975305,0.000115888,0.0004521588,0.000002715693],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002635998,"about_ca_system_score_gemma":0.0000547757,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.008776238,"about_ca_topic_score_gemma":0.07136713,"domain_scores_codex":[0.9984521,0.0009563753,0.0002916101,0.00009477796,0.00002669378,0.0001784641],"domain_scores_gemma":[0.9984198,0.001083383,0.0001058343,0.0003052062,0.00007239664,0.00001334286],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001165644,0.0001586498,0.7790491,0.00005718815,0.00006967765,0.000006402814,0.009741131,0.00006546969,0.2091912,0.000120565,0.0001220736,0.001301994],"study_design_scores_gemma":[0.001088616,0.0002415924,0.8304684,0.0006477634,0.00003446176,0.00009889026,0.01248408,0.000006175995,0.1542847,0.0003033288,0.0002107946,0.0001311387],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979073,0.0007336727,0.00001655502,0.0002035119,0.0001508956,0.0003424721,0.0003721812,0.000008369714,0.0002650108],"genre_scores_gemma":[0.9993719,0.00002151518,0.0002136164,0.000127272,0.00001782838,0.00002337417,0.0001965969,0.000008963465,0.00001894007],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0625909,"threshold_uncertainty_score":0.9978244,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01076565850135333,"score_gpt":0.2453272327433917,"score_spread":0.2345615742420384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}