{"id":"W3196360981","doi":"10.3390/v13091721","title":"Validation of a Genotype-Independent Hepatitis C Virus Near-Whole Genome Sequencing Assay","year":2021,"lang":"en","type":"article","venue":"Viruses","topic":"Hepatitis C virus research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; Western University; AIDS Vancouver; University of British Columbia","funders":"Genome British Columbia","keywords":"NS5B; Genotype; Genotyping; Virology; Biology; Hepatitis C virus; NS5A; Genetics; Hepacivirus; Virus; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005235256,0.0001680019,0.0003971659,0.0001474442,0.0001162312,0.00006355588,0.0001326236,0.0001418517,0.002494912],"category_scores_gemma":[0.0008096609,0.0001687055,0.0001219616,0.000491092,0.000108813,0.0002018383,0.0001419679,0.0002834429,0.0007365698],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003520837,"about_ca_system_score_gemma":0.001108352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005042962,"about_ca_topic_score_gemma":0.001043292,"domain_scores_codex":[0.9977047,0.0002363417,0.0004547775,0.0003739832,0.000855358,0.0003747926],"domain_scores_gemma":[0.9985063,0.0001434673,0.0001183563,0.0005570861,0.0004718555,0.0002029094],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005080625,0.0001185839,0.07022277,0.0001305372,0.0001195713,0.0006129625,0.0004216557,0.00008413876,0.9211699,0.0001079431,0.0003228809,0.006638209],"study_design_scores_gemma":[0.0008462789,0.0002032577,0.04227933,0.0001172876,0.00008121555,0.00008099799,0.00007440121,0.000439342,0.9036304,0.0001183458,0.05192548,0.0002036732],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909682,0.0009203689,0.0009200217,0.0001760615,0.0001407237,0.0003099272,0.0002177442,0.00007917972,0.006267791],"genre_scores_gemma":[0.9943631,0.0005552634,0.003098871,0.0006739029,0.0001597828,0.00003088951,0.0001460004,0.0000529779,0.000919263],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05160259,"threshold_uncertainty_score":0.998417,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0611409409201387,"score_gpt":0.3317446227758998,"score_spread":0.2706036818557611,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}