{"id":"W3196382384","doi":"10.3390/v13091734","title":"Examining the Effects of an Anti-Salmonella Bacteriophage Preparation, BAFASAL®, on Ex-Vivo Human Gut Microbiome Composition and Function Using a Multi-Omics Approach","year":2021,"lang":"en","type":"article","venue":"Viruses","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Microbiome; Biology; Salmonella; Gut microbiome; Food chain; Gut flora; Salmonella enterica; Antibiotics; Human pathogen; Human microbiome; Human health; Bacteriophage; Metagenomics; Pathogenic bacteria; Biotechnology; Microbiology; Bacteria; Gene; Escherichia coli; Bioinformatics; Immunology; Genetics; Ecology; Medicine; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009768964,0.0001440021,0.0001539664,0.00003786993,0.0002970274,0.0001009809,0.00008631904,0.0000671204,0.0001205791],"category_scores_gemma":[0.00001117826,0.0001215665,0.00003602846,0.0001466107,0.0001390321,0.0003904102,0.0001026352,0.00009997692,0.00001497028],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005562164,"about_ca_system_score_gemma":0.000007818648,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002946905,"about_ca_topic_score_gemma":0.00004721327,"domain_scores_codex":[0.9991058,0.0001401995,0.0002118261,0.0003193971,0.00007677184,0.0001460631],"domain_scores_gemma":[0.9994915,0.00005985475,0.0001352534,0.0002537914,0.00001518197,0.00004438012],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002947442,0.0002830579,0.0009144195,0.00003330788,0.00002186001,0.00000413668,0.0004713024,0.0002800981,0.9975861,0.00001156245,0.0000310927,0.0003335509],"study_design_scores_gemma":[0.0004016989,0.0001861361,0.176374,0.00005515014,0.0000691551,0.00005772031,0.0001571215,0.0009176283,0.8212115,0.000004240298,0.0004172063,0.0001485081],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980878,0.00005749538,0.001183028,0.0000046721,0.0002042639,0.0002427778,0.00002383334,0.00002671773,0.0001694197],"genre_scores_gemma":[0.997458,0.00001982683,0.002072419,0.0002387642,0.00004573065,0.000007488611,0.00004290846,0.00001926653,0.00009557296],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1763747,"threshold_uncertainty_score":0.4957336,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03659533009328157,"score_gpt":0.2816337205598232,"score_spread":0.2450383904665416,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}