{"id":"W3196382384","doi":"10.3390/v13091734","title":"Examining the Effects of an Anti-Salmonella Bacteriophage Preparation, BAFASAL®, on Ex-Vivo Human Gut Microbiome Composition and Function Using a Multi-Omics Approach","year":2021,"lang":"en","type":"article","venue":"Viruses","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Microbiome; Biology; Salmonella; Gut microbiome; Food chain; Gut flora; Salmonella enterica; Antibiotics; Human pathogen; Human microbiome; Human health; Bacteriophage; Metagenomics; Pathogenic bacteria; Biotechnology; Microbiology; Bacteria; Gene; Escherichia coli; Bioinformatics; Immunology; Genetics; Ecology; Medicine; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004419458,0.0004816864,0.0004357666,0.0002768642,0.0001996269,0.0004342238,0.0001323161,0.0004106369,0.0008618963],"category_scores_gemma":[0.0003978655,0.0002161093,0.0004221683,0.0001952276,0.0002972908,0.0002042974,0.0003017923,0.0004929312,0.0002389216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001423618,"about_ca_system_score_gemma":0.0002468854,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006445079,"about_ca_topic_score_gemma":0.001346,"domain_scores_codex":[0.9996095,0.00009405115,0.00002753465,0.0001159547,0.0001039709,0.00004893247],"domain_scores_gemma":[0.9997526,0.00007355399,0.00005666638,0.000022179,0.00005579998,0.00003923826],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004358446,0.00009721197,0.001620702,0.0001120688,0.0000294018,0.00001567729,0.0000311214,0.00008514876,0.9948921,0.000008747224,0.00002699288,0.002644966],"study_design_scores_gemma":[0.0000281861,0.005255649,0.06479091,0.00003386343,0.0002068492,0.0001871596,0.0002486761,0.001013143,0.9253685,0.00005456836,0.002784991,0.00002744304],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927004,0.002128868,0.003394665,0.0000799773,0.0000534177,0.00007404511,0.0009118139,0.00003545007,0.0006214011],"genre_scores_gemma":[0.983651,0.002139959,0.01035318,0.0002827585,0.00002604556,0.0001750292,0.001480443,0.00003766077,0.001853927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008618963,"threshold_uncertainty_score":0.002883315,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03659533009328157,"score_gpt":0.2816337205598232,"score_spread":0.2450383904665416,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}