{"id":"W3196859160","doi":"10.1101/2021.09.02.458786","title":"Commensal <i>Pseudomonas fluorescens</i> protect <i>Arabidopsis</i> from closely-related <i>Pseudomonas</i> pathogens in a colonization-dependent manner","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Western Canada Research Grid; Compute Canada; Natural Sciences and Engineering Research Council of Canada; Life Sciences Research Foundation","keywords":"Biology; Pseudomonas fluorescens; Microbiome; Pseudomonas; Pathogen; Microbiology; Rhizosphere; Human pathogen; Colonization; Pseudomonas aeruginosa; Arabidopsis thaliana; Arabidopsis; Pseudomonas syringae; Gene; Genetics; Bacteria; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001508104,0.0004866947,0.0002932006,0.0002960869,0.0001927324,0.0003294359,0.0002108633,0.000228416,0.001093167],"category_scores_gemma":[0.0001566589,0.0001425361,0.0002683515,0.0001876029,0.0001904536,0.0001780119,0.0003234306,0.0004390634,0.0003274403],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003456016,"about_ca_system_score_gemma":0.0002665394,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001854808,"about_ca_topic_score_gemma":0.002383931,"domain_scores_codex":[0.999756,0.00002872396,0.00001423016,0.00004497374,0.00008318968,0.00007294989],"domain_scores_gemma":[0.9997311,0.00003112341,0.00008132578,0.00003615479,0.00004178291,0.00007845653],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000269489,0.00001482472,0.0003835449,0.00000767166,0.000002066133,0.000008828687,0.000003096484,0.00001253496,0.9993122,0.000007221822,0.00001245372,0.0002087615],"study_design_scores_gemma":[0.00001152322,0.0006380383,0.05750128,0.000007006283,0.00002445613,0.0003530642,0.0001023162,0.001009415,0.9390948,0.00004755969,0.001200385,0.0000102688],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971735,0.0002634046,0.001007787,0.00005277021,0.000007635766,0.00001885726,0.0004597315,0.00009717682,0.0009191154],"genre_scores_gemma":[0.9973465,0.00008377508,0.0009192144,0.00005250591,0.000003112776,0.00001430445,0.0006946281,0.00002076345,0.0008651495],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001854808,"threshold_uncertainty_score":0.003688097,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0122708164005439,"score_gpt":0.1973422098960529,"score_spread":0.185071393495509,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}