{"id":"W3197049013","doi":"10.1128/mra.00577-21","title":"Genome Sequence of Staphylococcus aureus Strain PS/BAC/317/16/W, Isolated from Contaminated Platelet Concentrates in England","year":2021,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Blood Services; Health Canada; University of Ottawa","funders":"Health Canada; Government of Canada; Canadian Blood Services","keywords":"Staphylococcus aureus; Whole genome sequencing; Plasmid; Microbiology; Genome; Biology; Strain (injury); Staphylococcus; Chromosome; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003503304,0.000477464,0.001117085,0.0002099259,0.00009662077,0.00003009579,0.0003595784,0.0005070219,0.0007240776],"category_scores_gemma":[0.0001724034,0.0004708745,0.000167487,0.000647047,0.0006157457,0.0000852564,0.0001744008,0.0006133883,0.0000596126],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004002295,"about_ca_system_score_gemma":0.0004303991,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003144754,"about_ca_topic_score_gemma":0.0005332176,"domain_scores_codex":[0.9965677,0.0003411868,0.001076692,0.0009256195,0.0001773013,0.0009114874],"domain_scores_gemma":[0.998115,0.0002174573,0.0004194572,0.000674776,0.0004024389,0.0001708452],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001252345,0.0003862434,0.05922793,0.00008472331,0.0003781572,0.001052667,0.001023455,0.00003508853,0.9354368,0.00001146699,0.0005022091,0.0006088634],"study_design_scores_gemma":[0.01798712,0.001136067,0.02220941,0.001026831,0.0002211802,0.0001772301,0.002313309,0.00007855528,0.2287376,0.0001066573,0.7249412,0.001064821],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9805162,0.002529464,0.0001293851,0.000298543,0.000180656,0.0007674531,0.01478211,0.00006397034,0.0007322243],"genre_scores_gemma":[0.9747045,0.000260935,0.000297904,0.0009511771,0.00008523795,0.00002287529,0.0224924,0.0000502452,0.001134698],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.724439,"threshold_uncertainty_score":0.9997743,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01790009945356973,"score_gpt":0.2610198954067004,"score_spread":0.2431197959531307,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}