{"id":"W3197401043","doi":"10.1038/s41438-021-00614-y","title":"Chromosome-scale assembly and evolution of the tetraploid Salvia splendens (Lamiaceae) genome","year":2021,"lang":"en","type":"article","venue":"Horticulture Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Université Laval; Centre de Géomatique du Québec","funders":"Beijing Forestry University; Fundamental Research Funds for the Central Universities; Noble Research Institute; Umeå Universitet; Directorate for Biological Sciences; University of Pretoria; Nanjing Agricultural University; Universiteit Gent; European Commission; Université Laval; National Natural Science Foundation of China; Oklahoma State University","keywords":"Biology; Genome; Evolutionary biology; Neofunctionalization; Gene duplication; Genome evolution; Eudicots; Transposable element; Genetics; Synteny; Plant evolution; Comparative genomics; Genomics; Gene; Botany; Taxonomy (biology)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001263907,0.000299953,0.0001902836,0.0007513124,0.0002516792,0.000336239,0.0001887251,0.0001998882,0.0009218279],"category_scores_gemma":[0.0002659297,0.0001757285,0.000378221,0.0005765977,0.0001208078,0.0002545602,0.0003570307,0.0003836308,0.00043528],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003110903,"about_ca_system_score_gemma":0.0002358156,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002456289,"about_ca_topic_score_gemma":0.005226258,"domain_scores_codex":[0.9999403,0.000004350784,0.000004099762,0.00003102208,0.00001317624,0.000007069458],"domain_scores_gemma":[0.9998521,0.00002711183,0.00003464146,0.00002961546,0.00002757826,0.00002892465],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001092357,0.00001617654,0.006870515,0.0001238334,0.00004738327,0.0001787048,0.000204398,0.0007273667,0.9776233,0.0003230465,0.0002381814,0.01353784],"study_design_scores_gemma":[0.00004487671,0.0002913038,0.5848557,0.00005892269,0.0002648747,0.001215794,0.0004599224,0.01260787,0.3593106,0.001120327,0.03970829,0.00006137171],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9669529,0.001362538,0.02210925,0.0001371599,0.00003264354,0.00003898836,0.006681423,0.0006415915,0.002043489],"genre_scores_gemma":[0.9379218,0.0009373989,0.03644551,0.00007067553,0.00001770403,0.00005308549,0.02206176,0.000315058,0.002177014],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002456289,"threshold_uncertainty_score":0.004884005,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02678209677774562,"score_gpt":0.2680111184277215,"score_spread":0.2412290216499759,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}