{"id":"W3197804636","doi":"10.1084/jem.20200853","title":"Autoimmunity affecting the biliary tract fuels the immunosurveillance of cholangiocarcinoma","year":2021,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Liver Diseases and Immunity","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Beatrice Hunter Cancer Research Institute; Dalhousie University","funders":"High-end Foreign Experts Recruitment Plan of China; Labex Immuno-Oncology; European Research Area Network on Cardiovascular Diseases; Dalhousie Medical Research Foundation; Chancellerie des Universités de Paris; Institut Universitaire de France; Labex; Ligue Contre le Cancer; Fondation pour la Recherche Médicale; Horizon 2020 Framework Programme; Fondation de l'Avenir pour la Recherche Médicale Appliquée; Cancéropôle Ile de France; Dalhousie University; Institut National Du Cancer; Institut National de la Santé et de la Recherche Médicale; Institut Gustave-Roussy; Agence Nationale de la Recherche; Fondation Leducq; Canadian HIV Trials Network, Canadian Institutes of Health Research; Canadian Cancer Society; Canadian Institutes of Health Research; Association pour la Recherche sur le Cancer; Seerave Foundation; European Commission; E-Rare","keywords":"Immunosurveillance; Autoimmunity; Context (archaeology); Biliary tract; Immunology; Primary sclerosing cholangitis; Cancer research; Biology; Medicine; Immune system; Pathology; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002241997,0.0001878743,0.0002138647,0.0002552764,0.000165571,0.0003689692,0.00005831489,0.000188748,0.0009425603],"category_scores_gemma":[0.0001818015,0.0000819788,0.0001435458,0.0001055514,0.0002554379,0.000204465,0.0002363717,0.0003855399,0.0001663767],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001595849,"about_ca_system_score_gemma":0.0002016413,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001535683,"about_ca_topic_score_gemma":0.0003118469,"domain_scores_codex":[0.999844,0.00005531502,0.00001122068,0.0000201704,0.00002327165,0.00004608459],"domain_scores_gemma":[0.9998499,0.00002637786,0.00003941799,0.00001676673,0.00001522937,0.0000522342],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005390706,0.00005362477,0.01005035,0.0001535572,0.00001352112,0.0006084088,0.00008992869,0.0001449278,0.9805821,0.001156481,0.0001002378,0.006507744],"study_design_scores_gemma":[0.0001187969,0.003605564,0.2537744,0.000153672,0.0002017906,0.008322607,0.0008583593,0.004554959,0.7032572,0.004446366,0.0206652,0.00004108941],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992955,0.003072975,0.001016883,0.0001732269,0.00003841134,0.000009368774,0.00003629825,0.00003576011,0.002662017],"genre_scores_gemma":[0.9983307,0.0008006349,0.0003333832,0.00004941873,0.00002481089,0.000004490377,0.00002182176,0.000003098096,0.000431772],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009425603,"threshold_uncertainty_score":0.003153145,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02880704544254058,"score_gpt":0.3088946662883049,"score_spread":0.2800876208457643,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}