{"id":"W3197876170","doi":"10.7554/elife.66877","title":"Vision, challenges and opportunities for a Plant Cell Atlas","year":2021,"lang":"en","type":"article","venue":"eLife","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of Manitoba; University of Saskatchewan; University of Alberta","funders":"Pacific Northwest National Laboratory; Lawrence Berkeley National Laboratory; University of Massachusetts Amherst; Institute of Materials Research and Engineering; University of California, Los Angeles; Punjab Agricultural University; University of Delhi; University of New South Wales; La Trobe University; Helsingin Yliopisto; University of Alberta; University of Oxford; Weizmann Institute of Science; Pennsylvania State University; Bahauddin Zakariya University; Indian Council of Agricultural Research; Rheinische Friedrich-Wilhelms-Universität Bonn; Michigan State University; National Science Foundation; University of Nebraska-Lincoln; Université Catholique de Louvain; University of California, Davis; University of Wisconsin-Madison; University of Missouri; Nanyang Technological University; College of Engineering, Michigan State University; Princeton University; Washington State University; Division of Materials Research; Arkansas State University; Helsinki Institute of Life Science, Helsingin Yliopisto; Iowa State University; North Carolina State University; Biotechnology and Biological Sciences Research Council; Purdue University; Carnegie Institution of Washington; Universidad Veracruzana; Bayer","keywords":"Atlas (anatomy); Component (thermodynamics); Conceptual framework; Plant metabolism; Molecular cell biology; Plant development","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001574966,0.00005824732,0.0000888829,0.000004640691,0.00008571081,0.00002153346,0.00007378389,0.00006284988,0.00003603167],"category_scores_gemma":[0.00004532238,0.00002144495,0.00002878307,0.00002218357,0.00003848594,0.00002347068,0.00007586329,0.00004656862,0.000008296679],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000272942,"about_ca_system_score_gemma":0.0000113245,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004302533,"about_ca_topic_score_gemma":0.0001166382,"domain_scores_codex":[0.9994385,0.00005858214,0.00006769557,0.000176643,0.00009314631,0.0001653841],"domain_scores_gemma":[0.9996122,0.0002074592,0.00001686591,0.00002830525,0.0000587901,0.00007643962],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005487534,0.00009783582,0.0004986827,0.00003238796,0.00001925073,0.0001736913,0.000121979,1.124957e-7,0.8455706,0.001519715,0.01944569,0.1324652],"study_design_scores_gemma":[0.0001967697,0.0004051128,0.0249661,0.00002032111,0.000006417773,0.00008061113,0.001070647,0.00003746626,0.06456398,0.0002821873,0.9082057,0.0001646942],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9764158,0.01032704,0.000001032954,0.0105915,0.00004975017,0.00008722121,0.0001267671,0.00002176303,0.002379145],"genre_scores_gemma":[0.9732156,0.02213497,0.0001335904,0.0009710303,0.000241545,0.00003148534,0.0004129399,9.127501e-7,0.002857877],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.88876,"threshold_uncertainty_score":0.08744998,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1111170845217439,"score_gpt":0.2712400970769773,"score_spread":0.1601230125552334,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}