{"id":"W3198037554","doi":"10.1101/2021.08.31.458344","title":"The evolutionary origin of host association in an ancient bacterial clade","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Obligate; Genome; Alphaproteobacteria; Rickettsiales; Evolutionary biology; Host (biology); Clade; Phylogenetics; Phylogenomics; Genetics; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006087015,0.0002671102,0.0003904657,0.000707469,0.0008293719,0.001049467,0.00027536,0.0007228504,0.002236939],"category_scores_gemma":[0.0007329003,0.0002716641,0.0002093866,0.0007189846,0.0005002341,0.0008468013,0.001041235,0.0007295968,0.0009913349],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003513468,"about_ca_system_score_gemma":0.0002526303,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005117974,"about_ca_topic_score_gemma":0.0007121667,"domain_scores_codex":[0.9996973,0.00005373565,0.00001271554,0.0001212493,0.00006366119,0.00005130549],"domain_scores_gemma":[0.9995486,0.0000986066,0.00009015839,0.00007974766,0.00008823659,0.00009447897],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007200114,0.00009607388,0.1191904,0.0005599605,0.0001330908,0.0006854429,0.002985856,0.0009863602,0.8166581,0.004328395,0.000751479,0.05290483],"study_design_scores_gemma":[0.00003621668,0.0005328333,0.9215811,0.0002309993,0.0001254653,0.002864149,0.001845133,0.005855275,0.03225341,0.003843724,0.0307423,0.00008950005],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921388,0.001334338,0.003221439,0.000135328,0.00001945235,0.00001282824,0.0003859446,0.0001027471,0.002649168],"genre_scores_gemma":[0.9937398,0.0006442151,0.00335573,0.0001029425,0.00002917889,0.000008303667,0.0009053925,0.00005007842,0.001164332],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002236939,"threshold_uncertainty_score":0.007483304,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01666603295216209,"score_gpt":0.2148644845611117,"score_spread":0.1981984516089496,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}