{"id":"W3198374579","doi":"10.5376/tgmb.2021.11.0001","title":"Analysis of Codon Usage Bias in the <i>Platycarya</i> Chloroplast Genome","year":2021,"lang":"en","type":"article","venue":"Tree Genetics and Molecular Breeding","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Natural Science Foundation of China","keywords":"Codon usage bias; Genome; GC-content; Biology; Gene; Genetics; Phylogenetic tree","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003670893,0.0002672073,0.0003269276,0.001621058,0.0003340116,0.0003657021,0.0001262895,0.0001156147,0.00107783],"category_scores_gemma":[0.0006991493,0.000119697,0.0003642979,0.001886693,0.0002189902,0.000233768,0.0001703935,0.000354859,0.0002302567],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003136434,"about_ca_system_score_gemma":0.0002760047,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001077471,"about_ca_topic_score_gemma":0.001552663,"domain_scores_codex":[0.9996201,0.00005160099,0.00004674293,0.000152207,0.00009566452,0.00003373912],"domain_scores_gemma":[0.9995965,0.0001192742,0.0001611263,0.00002495607,0.00005919905,0.00003886866],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000707785,0.00007819399,0.1171248,0.0002897735,0.0001897315,0.0004162504,0.0005008745,0.0009247002,0.8392081,0.0006555227,0.0004708733,0.03943336],"study_design_scores_gemma":[0.0000321327,0.0003072034,0.8274479,0.00003842096,0.0002816,0.001366436,0.0004027439,0.02058692,0.1411306,0.0009008278,0.007442976,0.000062311],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907786,0.0003469828,0.006501235,0.00003101283,0.00001256789,0.00002131243,0.001205637,0.0001036582,0.0009990368],"genre_scores_gemma":[0.9816641,0.0002344832,0.01366879,0.00003565232,0.000007416233,0.0000660053,0.003416266,0.0001085497,0.0007987857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001621058,"threshold_uncertainty_score":0.003605723,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02167102723044279,"score_gpt":0.2365257300527946,"score_spread":0.2148547028223518,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}