{"id":"W3198682390","doi":"10.1002/ece3.8063","title":"Evolutionary patterns of nucleotide substitution rates in plastid genomes of <i>Quercus</i>","year":2021,"lang":"en","type":"article","venue":"Ecology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Pseudogene; Polyphyly; Plastid; Genome; Chloroplast DNA; Monophyly; Evolutionary biology; Gene; Phylogenetic tree; Genetics; Clade; Chloroplast","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002546061,0.0002177183,0.0001766159,0.001210407,0.0003926095,0.0004075059,0.0002124808,0.0002684273,0.0004867813],"category_scores_gemma":[0.0004930163,0.0001107581,0.0002776847,0.0006562809,0.0001916837,0.0001773478,0.00018925,0.0002999719,0.0001702359],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003772155,"about_ca_system_score_gemma":0.0001825669,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003062706,"about_ca_topic_score_gemma":0.004069054,"domain_scores_codex":[0.9997621,0.00003915221,0.00002116612,0.00009495945,0.00004144773,0.00004108959],"domain_scores_gemma":[0.9995224,0.0001185923,0.0001600706,0.00003920903,0.00007670512,0.00008305698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005783552,0.00007011034,0.3782032,0.0001659629,0.0003223031,0.0003818717,0.000885034,0.002353313,0.6033466,0.0006047291,0.0002242433,0.01286426],"study_design_scores_gemma":[0.000008251279,0.00009000344,0.9852072,0.00001764998,0.00005330046,0.0006626135,0.0003017391,0.003539447,0.008541283,0.0001651681,0.001391913,0.00002146854],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991331,0.0001151125,0.0002162907,0.000009395947,0.000002612156,0.000002238627,0.0002991759,0.000008665856,0.0002134317],"genre_scores_gemma":[0.9982418,0.00004315522,0.0004835295,0.00001429515,0.000002247082,0.000004362373,0.00108491,0.000008786397,0.0001170096],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003062706,"threshold_uncertainty_score":0.006089747,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006344736617651441,"score_gpt":0.2099077062698397,"score_spread":0.2035629696521882,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}